HHsearch alignment for GI: 254780821 and conserved domain: PRK04690
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=2.4e-39 Score=262.29 Aligned_cols=311 Identities=16% Similarity=0.213 Sum_probs=197.4
Q ss_pred CHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCC
Q ss_conf 95883598399945898479999999999997893514137841101200898884778715588999999999863047
Q gi|254780821|r 18 RPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKS 97 (429)
Q Consensus 18 ~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~ 97 (429)
T Consensus 109 ~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~---------------~GNI--G~P~~~~--------~~---- 159 (468)
T PRK04690 109 QPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTAL---------------VGNI--GQPLLEV--------LA---- 159 (468)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE---------------ECCC--CHHHHHH--------HC----
T ss_conf 11256787899969985899999999999857998289---------------8677--6446765--------32----
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 76779578999999987411446247776444756764135677515898602500000027852344566653113798
Q gi|254780821|r 98 AQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC 177 (429)
Q Consensus 98 ~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~ 177 (429)
T Consensus 160 ------------------~~~~~d~~VlElSSfQLe~~~~~~~~p~iavilNispDHLDrHg-s~e~Y~~aK~~If~~~~ 220 (468)
T PRK04690 160 ------------------PQPAPAYWAIELSSYQTGDVGRSGARPELAVVLNLFPEHLDWHG-GEARYVRDKLSLVTEGR 220 (468)
T ss_pred ------------------CCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHHHHCC-CHHHHHHHHHHHHHCCC
T ss_conf ------------------47888579999432057654531478778753048887874608-99999999999996579
Q ss_pred C--CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3--31544471789889999862105665235763210125852444310333344444432222111114699998753
Q gi|254780821|r 178 P--VVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMA 255 (429)
Q Consensus 178 ~--~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~l 255 (429)
T Consensus 221 ~~~~vin~~-D~~~~~~-----~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~L~G~HN~~NalAA~a~a~~l 293 (468)
T PRK04690 221 PRIALLNAA-DPRLAAL-----QLPDSEVRWFNHPDGWHVRG-DVVYRGEQAIFDTANVPLPGRHNRGNLCAVLAALEAL 293 (468)
T ss_pred CCEEEEECC-CHHHHHH-----HCCCCCEEEECCCCCEEECC-CEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 977999788-8899975-----25778469951777537606-6788356201111236777700487699999999983
Q ss_pred HHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CC
Q ss_conf 20000110011222233-665303542287544457874599933-6321579988865433114777712431134-67
Q gi|254780821|r 256 GFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VE 332 (429)
Q Consensus 256 g~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~ 332 (429)
T Consensus 294 G--v~~~~I~~aL~sF~glpHRlE~v~~-------~~gv~fiNDSKATN~~a~~~AL~~f------~~~~iilI~GG~~K 358 (468)
T PRK04690 294 G--LDAAALAPAAASFRPLPNRLQELGS-------VDGITYVNDSISTTPHASLAALDCF------AGRRVALLVGGHDR 358 (468)
T ss_pred C--CCHHHHHHHHHHCCCCCCCEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHC------CCCCEEEEECCCCC
T ss_conf 8--9889999987426799975279999-------8999997378778989999999727------66857999736766
Q ss_pred CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 9898999998886388899984228899842127898999999985----499789969989999999986035886799
Q gi|254780821|r 333 GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKK----LGFQAMACSSMIEALSRVRKINEELPPPLI 408 (429)
Q Consensus 333 dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~eAi~~a~~~~~~~~~d~V 408 (429)
T Consensus 359 g~d~~~l~~~~~~~~~~~vi--~~G---------~~~~~i~~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~~-~~~gd~V 426 (468)
T PRK04690 359 GLDWTDFAAHMAQQAPLEIV--TMG---------ANGPRIHALLAPLADAGRFGLHAADDLPHAMALARTAL-GAQGGVV 426 (468)
T ss_pred CCCHHHHHHHHHHCCCEEEE--EEC---------CCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHC-CCCCCEE
T ss_conf 77879999998633768999--974---------78899999975234456310254067999999999960-5899989
Q ss_pred EE
Q ss_conf 99
Q gi|254780821|r 409 LI 410 (429)
Q Consensus 409 LV 410 (429)
T Consensus 427 LL 428 (468)
T PRK04690 427 LL 428 (468)
T ss_pred EE
T ss_conf 97