HHsearch alignment for GI: 254780821 and conserved domain: cd03114
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.93 E-value=0.0025 Score=39.68 Aligned_cols=135 Identities=22% Similarity=0.339 Sum_probs=69.8
Q ss_pred EEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE----CCCC--CEEEEEEEECCCC-CCCEECCHHHHHHHHHHHHHCC
Q ss_conf 39994589--847999999999999789351413----7841--1012008988847-7871558899999999986304
Q gi|254780821|r 26 VIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT----SPHL--IRWNERFRLGVKG-GRGRLVEDVELLDVFRRVRRVK 96 (429)
Q Consensus 26 vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t----SPhl--~~~~Eri~i~~~~-~~g~~i~~~~~~~~~~~i~~~~ 96 (429)
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfi------------Rs~a 68 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFI------------RSLA 68 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEE------------EECC
T ss_conf 9762589978789999999999997898379999688878668620323545344157998368------------6346
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH-HHH-HHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 7767795789999999874114462477764-447-56764135677515898602500000027852344566653113
Q gi|254780821|r 97 SAQNLTIFELSIATALVLFSKYPADCAIIEV-GLG-GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK 174 (429)
Q Consensus 97 ~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~-GlG-Gr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k 174 (429)
T Consensus 69 trg~~ggla~~~~~~i~~l~~~g~D~IiIETvGvGQse~~i~~~a---D~~i~-v~~p~----~GD~i---Q~~K~gi~e 137 (148)
T cd03114 69 TRGFLGGLSRATPEVIRVLDAAGFDVIIVETVGVGQSEVDIASMA---DTTVV-VMAPG----AGDDI---QAIKAGIME 137 (148)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHC---CEEEE-EECCC----CCCHH---HHCCCCHHH
T ss_conf 666542046889999999997599989997487775602655435---66999-96368----87377---611228521
Q ss_pred CCCCCCCCC
Q ss_conf 798331544
Q gi|254780821|r 175 PGCPVVIGH 183 (429)
Q Consensus 175 ~~~~~v~~~ 183 (429)
T Consensus 138 ~aDl~vvNK 146 (148)
T cd03114 138 IADIVVVNK 146 (148)
T ss_pred CCCEEEEEC
T ss_conf 246999937