HHsearch alignment for GI: 254780821 and conserved domain: pfam02875
>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=99.43 E-value=9.1e-13 Score=98.00 Aligned_cols=77 Identities=22% Similarity=0.178 Sum_probs=60.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHH---HHHHHHHHHCCE
Q ss_conf 66530354228754445787459993363215799888654331147777124311346798989---999988863888
Q gi|254780821|r 273 WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYG---RYLEAFVELSPI 349 (429)
Q Consensus 273 ~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~---~~l~~l~~~~d~ 349 (429)
T Consensus 1 vpGR~e~i~~-------~~~~~vi~DyaHnp~~~~a~l~~~~~~---~~~r~i~V~G~~g~r~~~~r~~~g~~a~~~ad~ 70 (87)
T pfam02875 1 VPGRLEVVGE-------NNGVLVIDDYAHNPDALEAALQALKEL---FDGRLILVFGAGGDRDAEFHALLGALAAALADV 70 (87)
T ss_pred CCCCCEEEEC-------CCCCEEEEECCCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 9997389865-------899789996789969999999999862---688789999998888678999999999971999
Q ss_pred EEEEEECCCC
Q ss_conf 9998422889
Q gi|254780821|r 350 VLSVSLICRG 359 (429)
Q Consensus 350 i~~~~~~~~~ 359 (429)
T Consensus 71 viit~~~p~~ 80 (87)
T pfam02875 71 VILTGDYPRA 80 (87)
T ss_pred EEECCCCCCC
T ss_conf 9999988999