HHsearch results for GI: 254780821 and protein with PDBid: 1j8m_F
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.40 E-value=0.42 Score=24.58 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=17.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 31544471789889999862105665235
Q gi|254780821|r 179 VVIGHQVYDEVREILVSKAEKMGCPYNVY 207 (429)
Q Consensus 179 ~v~~~~~~~~~~~~i~~~a~~~~~~~~~~ 207 (429)
++..+...+...+.++..+...+++++..
T Consensus 131 l~a~Dt~R~aA~eQL~~~a~~~~v~~~~~ 159 (297)
T 1j8m_F 131 LVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp EEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 12115654448999999863139515423