HHsearch results for GI: 254780821 and protein with PDBid: 1j8m_F

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.40  E-value=0.42  Score=24.58  Aligned_cols=29  Identities=17%  Similarity=0.101  Sum_probs=17.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             31544471789889999862105665235
Q gi|254780821|r  179 VVIGHQVYDEVREILVSKAEKMGCPYNVY  207 (429)
Q Consensus       179 ~v~~~~~~~~~~~~i~~~a~~~~~~~~~~  207 (429)
                      ++..+...+...+.++..+...+++++..
T Consensus       131 l~a~Dt~R~aA~eQL~~~a~~~~v~~~~~  159 (297)
T 1j8m_F          131 LVGADVYRPAALEQLQQLGQQIGVPVYGE  159 (297)
T ss_dssp             EEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred             EEECCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             12115654448999999863139515423