HHsearch results for GI: 254780821 and protein with PDBid: 1p3d_A
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=1.6e-43 Score=286.68 Aligned_cols=334 Identities=18% Similarity=0.162 Sum_probs=219.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
+++|+||||||||||+.|++++|+++|++++... |+. +.++.. .
T Consensus 118 ~~~iaVTGTnGKTTTt~li~~il~~~g~~~~~~~-------------g~~---~~~~~~---------------~----- 161 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVN-------------GGL---VKSAGK---------------N----- 161 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEE-------------EEE---ETTTTE---------------E-----
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE-------------CCC---CCCCCH---------------H-----
T ss_conf 5257886567875179999999997799978998-------------981---465410---------------0-----
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCC
Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113---798331
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVV 180 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v 180 (429)
......|+.|+|+.- +|.+-.--+|+++|||||++||+|+++.++|+++..|..|++ ++..+|
T Consensus 162 -----------~~~~~~~~~V~E~s~---~~~~~~~~~p~iavitNI~~DHlD~~~~~~e~y~~~k~~i~~~~~~~~~~i 227 (475)
T 1p3d_A 162 -----------AHLGASRYLIAEADE---SDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAV 227 (475)
T ss_dssp -----------EECCSSSEEEEECCC---TTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred -----------CCCCCCCEEEEEECC---CHHHHHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf -----------336898728999763---445586359988999678712420106889999999999995699488899
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC---------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5444717898899998621056652357632101---------2585244431033334444443222211111469999
Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAF---------EKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICA 251 (429)
Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa 251 (429)
++.+ ++...... ....+....++.+.... ...................++++|.||++|+++|+++
T Consensus 228 ~n~d-d~~~~~~~----~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAiav 302 (475)
T 1p3d_A 228 MCAD-DPVLMELV----PKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAV 302 (475)
T ss_dssp EETT-CHHHHHHH----HHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHH
T ss_pred EECC-CHHHHHHH----HHHCCCEEEECCCCCCCCCCCCCHHHCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 9688-67887667----863785799525766552211100001465200012444201220046754669999999999
Q ss_pred HHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 875320000110011222233-6653035422875444578745999336321579988865433114777712431134
Q gi|254780821|r 252 VQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGM 330 (429)
Q Consensus 252 ~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~ 330 (429)
+..+|+ +.+.|.++|.++. .|+|||.+.+ .....++..++.||||||++++++++.++... +.+++++++++
T Consensus 303 a~~lGi--~~e~i~~aL~~f~g~~~R~e~~~e---i~~~~~~~~iiDDya~~p~si~a~l~al~~~~--~~~~ii~i~~~ 375 (475)
T 1p3d_A 303 AKEEGI--ANEAILEALADFQGAGRRFDQLGE---FIRPNGKVRLVDDYGHHPTEVGVTIKAAREGW--GDKRIVMIFQP 375 (475)
T ss_dssp HHHTTC--CHHHHHHHHHTCCCBTTSSEEEEE---EEETTEEEEEEEECCCSHHHHHHHHHHHHHHH--CSSCEEEEECC
T ss_pred HHHCCC--CHHHHHHHHHHCCCCCCCCEEEEE---EEECCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEECC
T ss_conf 998499--999999767643787531106889---99548978999767889799999999998656--99769999547
Q ss_pred CCCCCHHHHHHHH---HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 6798989999988---8638889998422889984212789899999998549-97899699899999999860358867
Q gi|254780821|r 331 VEGKKYGRYLEAF---VELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG-FQAMACSSMIEALSRVRKINEELPPP 406 (429)
Q Consensus 331 ~~dKd~~~~l~~l---~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~eAi~~a~~~~~~~~~d 406 (429)
.+..+..++.+.+ ...+|.++...+++..... ......+.+.+.+...+ .++..+++.++|++.+.+.. +++|
T Consensus 376 ~~~~~~~~~~~e~~~~l~~~d~vil~~i~~a~e~~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~ea~~~l~~~~--~~gD 452 (475)
T 1p3d_A 376 HRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAP-IVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQII--QDGD 452 (475)
T ss_dssp BCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCC-CTTCSHHHHHHHHHHHTSCCCEEESCGGGHHHHHHHHC--CTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC--CCCC
T ss_conf 77732789999999999849999987766776665-45848999999998608989799699999999999858--9989
Q ss_pred EEEEEC--CHHHHHHHHH
Q ss_conf 999949--7799999999
Q gi|254780821|r 407 LILIAG--SLYLAGEALR 422 (429)
Q Consensus 407 ~VLV~G--S~ylvge~l~ 422 (429)
+||++| |++-+.+.|.
T Consensus 453 vVL~~GsG~i~~~~~~l~ 470 (475)
T 1p3d_A 453 LILAQGAGSVSKISRGLA 470 (475)
T ss_dssp EEEEECSSTHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHH
T ss_conf 999978998899999999