HHsearch results for GI: 254780821 and protein with PDBid: 2wtz_A
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=346.79 Aligned_cols=360 Identities=19% Similarity=0.207 Sum_probs=248.0
Q ss_pred CCCCHHHHHHHHHH-CCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEEC
Q ss_conf 77888999999987-29958835983999458984799999999999978935141378411012008988847787155
Q gi|254780821|r 2 AADSLLKMGYLLED-LGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLV 80 (429)
Q Consensus 2 ~~~~l~r~~~ll~~-lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i 80 (429)
..|++.-+..|..+ .|+|+.++ +|||||||||||||+.|++++|+++|+++++++||++..+.+++... ....
T Consensus 124 v~d~~~aL~~la~~~~~~p~~~l-~vI~VTGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~~~~~~~~~~~~-----~t~~ 197 (535)
T 2wtz_A 124 HPAPRGVLGGLAATVYGHPSERL-TVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSA-----LTTP 197 (535)
T ss_dssp CSSSHHHHHHHHHHHTTCGGGSS-EEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCS-----SSSC
T ss_pred ECCHHHHHHHHHHHHHCCHHHCC-EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCC-----CCCC
T ss_conf 89899999999999864810078-19999699988999999999998539740124773123037511556-----7885
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHCCCCCCCEEEEEECCCHHCC
Q ss_conf 88999999999863047767795789999999874114462477764447----56764135677515898602500000
Q gi|254780821|r 81 EDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG----GSLDATNIIEKVAVSVITSISLDHEK 156 (429)
Q Consensus 81 ~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG----Gr~DaTnvi~~~~vavITnI~~DHle 156 (429)
....+. ..+..+.+.++...++|+..- +|.| ...|+++++|||+.||++
T Consensus 198 ~~~~l~-----------------------~~~~~~~e~g~~~~~~e~~~~~~~~~r~~----~~~~~v~vitni~~~Hl~ 250 (535)
T 2wtz_A 198 EAPTLQ-----------------------AMLAAMVERGVDTVVMEVSSHALALGRVD----GTRFAVGAFTNLSRDHLD 250 (535)
T ss_dssp CHHHHH-----------------------HHHHHHHHTTCCEEEEECCHHHHHTTTTT----TCCEEEEEECCCCSCCTT
T ss_pred CHHHHH-----------------------HHHHHHHHCCCCEEEEEECHHHHHHCCCC----CCCCEEEEEECCCHHHHH
T ss_conf 415667-----------------------66666650698658997121167752433----356408999656278865
Q ss_pred CCCCCHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCC-----CCC-CCEEEEEE
Q ss_conf 02785234456665311379-----83315444717898899998621056652-35763210-----125-85244431
Q gi|254780821|r 157 ILGNTVSAIAKDKSGIIKPG-----CPVVIGHQVYDEVREILVSKAEKMGCPYN-VYGDDFYA-----FEK-NKCLVYQD 224 (429)
Q Consensus 157 ~LG~tle~Ia~eKa~I~k~~-----~~~v~~~~~~~~~~~~i~~~a~~~~~~~~-~~~~~~~~-----~~~-~~~~~~~~ 224 (429)
++| +++.++.+|+.++.+. ...+++.+ ++....+. ........... ....++.. ... ...+....
T Consensus 251 ~~~-~~e~~~~~K~~lf~~~~~~~~~~~v~n~~-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
T 2wtz_A 251 FHP-SMADYFEAKASLFDPDSALRARTAVVCID-DDAGRAMA-ARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAID 327 (535)
T ss_dssp TSS-SHHHHHHHHHTTTCTTSTTCCSEEEEECS-SHHHHHHH-HHHSSCEEEESSSSCCSEEEEEEEEETTTEEEEEEEC
T ss_pred HCC-CHHHHHHHHHHHHHCCCCCCCCEEEEECC-HHHHHHHH-HHCCCCCEEECCCCCCHHHHHHHCCCCCCCCEEECCC
T ss_conf 237-56765444332110024445753899255-08899997-6303441122146630023332022235761122035
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHH
Q ss_conf 03333444444322221111146999987532000011001122223366530354228754445787459993363215
Q gi|254780821|r 225 KISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 (429)
Q Consensus 225 ~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~ 304 (429)
..+......++|+|.||++|+++|++++..+|+ +.+.|.++|.+++||||||.+..+ .+..+++||+|||+
T Consensus 328 ~~g~~~~i~l~l~G~hnv~NalaAia~a~~lgi--~~~~i~~~L~~~~~~gR~e~i~~~-------~~~~i~~dya~np~ 398 (535)
T 2wtz_A 328 PAGVGHHIGIRLPGRYNVANCLVALAILDTVGV--SPEQAVPGLREIRVPGRLEQIDRG-------QGFLALVDYAHKPE 398 (535)
T ss_dssp TTSCEEEEEESCCSHHHHHHHHHHHHHHHHTTC--CHHHHHHHHTTCCCTTSSEECCSS-------CSSEEEEECCCSHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHCCCCCCEEEEEEC-------CCCEEEEECCCCHH
T ss_conf 543102443225672157779999999987499--999999999869986738999851-------89689996799969
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCH---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC--
Q ss_conf 79988865433114777712431134679898---9999988863888999842288998421278989999999854--
Q gi|254780821|r 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKY---GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKL-- 379 (429)
Q Consensus 305 s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~---~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 379 (429)
++.+.+..+.. ..+++++|||+++|||. ..|.+...+.+|.++++...++...+.. ..+++.+.+.+.
T Consensus 399 ~~~~~l~~~~~----~~~r~~~Vlg~~gd~~~~~~~~~~~~a~~~ad~vi~t~~~pr~e~~~~---i~~~i~~~~~~~~~ 471 (535)
T 2wtz_A 399 ALRSVLTTLAH----PDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTA---IRREILAGAAEVGG 471 (535)
T ss_dssp HHHHHHHTTCC----SSSCEEEEECCCTTSCGGGHHHHHHHHHHHCSEEEECCSCCTTSCHHH---HHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHH----HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHH---HHHHHHHHHHHHCC
T ss_conf 99999999764----159967997877887577899999999962999999987767579899---99999987897479
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHH
Q ss_conf 997899699899999999860358867999949779
Q gi|254780821|r 380 GFQAMACSSMIEALSRVRKINEELPPPLILIAGSLY 415 (429)
Q Consensus 380 ~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~y 415 (429)
..++..++++++|++.+.+.+ +++|+|||+|+.+
T Consensus 472 ~~~v~~~~d~~eAi~~a~~~a--~~gDvVLv~G~Gh 505 (535)
T 2wtz_A 472 DAQVVEIADRRDAIRHAVAWA--RPGDVVLIAGKGH 505 (535)
T ss_dssp CCEEEECCSHHHHHHHHHHHC--CTTCEEEEESCTT
T ss_pred CCCEEEECCHHHHHHHHHHHC--CCCCEEEECCCCC
T ss_conf 988899599999999999838--9999999837888