HHsearch results for GI: 254780821 and protein with PDBid: 3hn7_A

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00  E-value=0  Score=312.92  Aligned_cols=353  Identities=17%  Similarity=0.129  Sum_probs=219.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r   24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI  103 (429)
Q Consensus        24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~  103 (429)
                      .++|+||||||||||++|++++|+.+|++++.++             ++....  ......+....  ..........  
T Consensus       122 ~~vI~VTGTnGKTTTt~mi~~iL~~~g~~~~~~i-------------Gg~~~~--~~~~~~~~~~~--~~~~~~~~~~--  182 (524)
T 3hn7_A          122 RHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLI-------------GGVPLV--NTTDTNLQQVF--AHSSYLGTEK--  182 (524)
T ss_dssp             SEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEEC-------------SCCBCC--CSSCHHHHHHT--TSSEECCCCC--
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE-------------CCCCCC--CCCCCCCCCCC--CCCHHHHHHH--
T ss_conf             8289997888825389999999997299862997-------------570345--77664335677--8733430134--


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CC
Q ss_conf             789999999874114462477764447----56764135677515898602500000027852344566653113---79
Q gi|254780821|r  104 FELSIATALVLFSKYPADCAIIEVGLG----GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PG  176 (429)
Q Consensus       104 FE~lt~~a~~~f~~~~~d~~vlE~GlG----Gr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~  176 (429)
                              .......+.|++|+|+.--    +..-.....-+|+++|||||++||+|++| |+++++.+|..+++   ++
T Consensus       183 --------~~~~~~~~~~~~V~E~~e~~~s~~~~~~~~~~~~p~iaviTNI~~DHLd~~~-s~e~~~~ak~~i~~~~~~~  253 (524)
T 3hn7_A          183 --------DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQTQFHHMVRMIPST  253 (524)
T ss_dssp             --------CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHHHHHHHHTTSCTT
T ss_pred             --------HHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHHHHHHHHHCCCCC
T ss_conf             --------4554024688799998444301455200014446768999747786732333-0355566777787428878


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHH-----------------CCCCCCCCC----CCCCC---CCCCCEEEEE--ECCCCCC
Q ss_conf             83315444717898899998621-----------------056652357----63210---1258524443--1033334
Q gi|254780821|r  177 CPVVIGHQVYDEVREILVSKAEK-----------------MGCPYNVYG----DDFYA---FEKNKCLVYQ--DKISQTN  230 (429)
Q Consensus       177 ~~~v~~~~~~~~~~~~i~~~a~~-----------------~~~~~~~~~----~~~~~---~~~~~~~~~~--~~~~~~~  230 (429)
                      ..+|++.+ ++.+.+.+.+.+..                 ...+...++    .++..   ...+..+.+.  +......
T Consensus       254 g~~V~n~d-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~  332 (524)
T 3hn7_A          254 GKIIMPAA-TISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFNDNKEATA  332 (524)
T ss_dssp             SEEEEESS-CHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             CCEEECCC-HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCEEE
T ss_conf             85475340-45699999987643103431111011111134653022035546549999998548713564311564047


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHH
Q ss_conf             444443222211111469999875320000110011222233-6653035422875444578745999336321579988
Q gi|254780821|r  231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVV  309 (429)
Q Consensus       231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l  309 (429)
                      ...++++|.||++|+++|++++..+|+  +.+.|+++|++++ .|||||++..       .++..++.||||||++++++
T Consensus       333 ~~~l~l~G~hNv~NalaAia~a~~lGi--~~~~i~~~L~~f~g~~~R~e~i~~-------~~~~~viDDYahnP~si~a~  403 (524)
T 3hn7_A          333 LVNWSMSGLHNVNNALVAIAAAYNIGV--SVKTACAALSAFAGIKRRMELIGD-------VNDILVFDDFAHHPTAITTT  403 (524)
T ss_dssp             EEECSCCSHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHTCCCBTTSSEEEEE-------ETTEEEEEECCCSHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCC--CHHEEEECCCCCCCCHHHHEEEEE-------CCCCEEEEECCCCHHHHHHH
T ss_conf             898357771999999999999997199--604022200046773324035640-------47815997347998999999


Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCC---C-CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH---HHCCCC
Q ss_conf             865433114777712431134679---8-989999988863888999842288998421278989999999---854997
Q gi|254780821|r  310 SKEISKLKGSSNKPFYLVIGMVEG---K-KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEA---KKLGFQ  382 (429)
Q Consensus       310 ~~~l~~l~~~~~~~i~~I~G~~~d---K-d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~  382 (429)
                      ++.++...  +.+++++||+..+.   + ...+.+......+|.++........       ..+.......   .....+
T Consensus       404 l~al~~~~--~~~rii~v~~~~~~s~~~~~~~~~~~~~~~~aD~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  474 (524)
T 3hn7_A          404 LDGAKKKL--ADRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLE-------WGLKEVIDNATIANPSIGS  474 (524)
T ss_dssp             HHHHHHHH--TTSCEEEEEECCCCSSCCSCCTTHHHHHTTTSSEEEEECCTTCC-------CSHHHHHHHHHHHCGGGCC
T ss_pred             HHHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCC-------CCHHHHHHHHHHHCCCCCC
T ss_conf             99999766--99859999888998421346689999999749999997888766-------4878788799874345788


Q ss_pred             EEEECCHHHHHHHHHHHCCCCCCCEEEE--ECCHHHHHH-HHHHCC
Q ss_conf             8996998999999998603588679999--497799999-999879
Q gi|254780821|r  383 AMACSSMIEALSRVRKINEELPPPLILI--AGSLYLAGE-ALRENG  425 (429)
Q Consensus       383 ~~~~~~~~eAi~~a~~~~~~~~~d~VLV--~GS~ylvge-~l~~~g  425 (429)
                      ...++++++|++.+.+.+  +++|+||+  +||++-+++ ++..++
T Consensus       475 ~~~~~~~~eai~~~~~~a--~~gDiVLi~G~G~~~~i~~~ll~~L~  518 (524)
T 3hn7_A          475 QQVLSSVDDIIKHICTHA--KAGDAIVIMSNGGFEGIHQRLLTALG  518 (524)
T ss_dssp             EEEESCHHHHHHHHHHHC--CTTCEEEEEESSCGGGHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             499899999999999857--99899999879976589999999873