HHsearch results for GI: 254780821 and protein with PDBid: 3hn7_A
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=0 Score=312.92 Aligned_cols=353 Identities=17% Similarity=0.129 Sum_probs=219.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
.++|+||||||||||++|++++|+.+|++++.++ ++.... ......+.... ..........
T Consensus 122 ~~vI~VTGTnGKTTTt~mi~~iL~~~g~~~~~~i-------------Gg~~~~--~~~~~~~~~~~--~~~~~~~~~~-- 182 (524)
T 3hn7_A 122 RHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLI-------------GGVPLV--NTTDTNLQQVF--AHSSYLGTEK-- 182 (524)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEEC-------------SCCBCC--CSSCHHHHHHT--TSSEECCCCC--
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE-------------CCCCCC--CCCCCCCCCCC--CCCHHHHHHH--
T ss_conf 8289997888825389999999997299862997-------------570345--77664335677--8733430134--
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CC
Q ss_conf 789999999874114462477764447----56764135677515898602500000027852344566653113---79
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLG----GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PG 176 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlG----Gr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~ 176 (429)
.......+.|++|+|+.-- +..-.....-+|+++|||||++||+|++| |+++++.+|..+++ ++
T Consensus 183 --------~~~~~~~~~~~~V~E~~e~~~s~~~~~~~~~~~~p~iaviTNI~~DHLd~~~-s~e~~~~ak~~i~~~~~~~ 253 (524)
T 3hn7_A 183 --------DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQTQFHHMVRMIPST 253 (524)
T ss_dssp --------CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHHHHHHHHTTSCTT
T ss_pred --------HHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHHHHHHHHHCCCCC
T ss_conf --------4554024688799998444301455200014446768999747786732333-0355566777787428878
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH-----------------CCCCCCCCC----CCCCC---CCCCCEEEEE--ECCCCCC
Q ss_conf 83315444717898899998621-----------------056652357----63210---1258524443--1033334
Q gi|254780821|r 177 CPVVIGHQVYDEVREILVSKAEK-----------------MGCPYNVYG----DDFYA---FEKNKCLVYQ--DKISQTN 230 (429)
Q Consensus 177 ~~~v~~~~~~~~~~~~i~~~a~~-----------------~~~~~~~~~----~~~~~---~~~~~~~~~~--~~~~~~~ 230 (429)
..+|++.+ ++.+.+.+.+.+.. ...+...++ .++.. ...+..+.+. +......
T Consensus 254 g~~V~n~d-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~ 332 (524)
T 3hn7_A 254 GKIIMPAA-TISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFNDNKEATA 332 (524)
T ss_dssp SEEEEESS-CHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred CCEEECCC-HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCEEE
T ss_conf 85475340-45699999987643103431111011111134653022035546549999998548713564311564047
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHH
Q ss_conf 444443222211111469999875320000110011222233-6653035422875444578745999336321579988
Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVV 309 (429)
Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l 309 (429)
...++++|.||++|+++|++++..+|+ +.+.|+++|++++ .|||||++.. .++..++.||||||++++++
T Consensus 333 ~~~l~l~G~hNv~NalaAia~a~~lGi--~~~~i~~~L~~f~g~~~R~e~i~~-------~~~~~viDDYahnP~si~a~ 403 (524)
T 3hn7_A 333 LVNWSMSGLHNVNNALVAIAAAYNIGV--SVKTACAALSAFAGIKRRMELIGD-------VNDILVFDDFAHHPTAITTT 403 (524)
T ss_dssp EEECSCCSHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHTCCCBTTSSEEEEE-------ETTEEEEEECCCSHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCC--CHHEEEECCCCCCCCHHHHEEEEE-------CCCCEEEEECCCCHHHHHHH
T ss_conf 898357771999999999999997199--604022200046773324035640-------47815997347998999999
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCC---C-CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH---HHCCCC
Q ss_conf 865433114777712431134679---8-989999988863888999842288998421278989999999---854997
Q gi|254780821|r 310 SKEISKLKGSSNKPFYLVIGMVEG---K-KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEA---KKLGFQ 382 (429)
Q Consensus 310 ~~~l~~l~~~~~~~i~~I~G~~~d---K-d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~ 382 (429)
++.++... +.+++++||+..+. + ...+.+......+|.++........ ..+....... .....+
T Consensus 404 l~al~~~~--~~~rii~v~~~~~~s~~~~~~~~~~~~~~~~aD~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 474 (524)
T 3hn7_A 404 LDGAKKKL--ADRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLE-------WGLKEVIDNATIANPSIGS 474 (524)
T ss_dssp HHHHHHHH--TTSCEEEEEECCCCSSCCSCCTTHHHHHTTTSSEEEEECCTTCC-------CSHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCC-------CCHHHHHHHHHHHCCCCCC
T ss_conf 99999766--99859999888998421346689999999749999997888766-------4878788799874345788
Q ss_pred EEEECCHHHHHHHHHHHCCCCCCCEEEE--ECCHHHHHH-HHHHCC
Q ss_conf 8996998999999998603588679999--497799999-999879
Q gi|254780821|r 383 AMACSSMIEALSRVRKINEELPPPLILI--AGSLYLAGE-ALRENG 425 (429)
Q Consensus 383 ~~~~~~~~eAi~~a~~~~~~~~~d~VLV--~GS~ylvge-~l~~~g 425 (429)
...++++++|++.+.+.+ +++|+||+ +||++-+++ ++..++
T Consensus 475 ~~~~~~~~eai~~~~~~a--~~gDiVLi~G~G~~~~i~~~ll~~L~ 518 (524)
T 3hn7_A 475 QQVLSSVDDIIKHICTHA--KAGDAIVIMSNGGFEGIHQRLLTALG 518 (524)
T ss_dssp EEEESCHHHHHHHHHHHC--CTTCEEEEEESSCGGGHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 499899999999999857--99899999879976589999999873