HHsearch results for GI: 254780821 and protein with PDBid: 3lk7_A

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00  E-value=2.4e-42  Score=279.43  Aligned_cols=310  Identities=18%  Similarity=0.233  Sum_probs=205.6

Q ss_pred             CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCC
Q ss_conf             99588359839994589847999999999999789351413784110120089888477871558899999999986304
Q gi|254780821|r   17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVK   96 (429)
Q Consensus        17 g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~   96 (429)
                      ..+..+. ++|+||||||||||+.|++++|+..|.+++....              .   +.+...              
T Consensus       106 ~~~~~~~-~vIgVTGT~GKTTt~~~l~~iL~~~~~~~~~~~~--------------~---~~~~~~--------------  153 (451)
T 3lk7_A          106 AYLVSES-QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN--------------I---GFPASE--------------  153 (451)
T ss_dssp             HHHHCCS-EEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEET--------------S---SSCHHH--------------
T ss_pred             HHHHHHC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCC--------------C---CCCCHH--------------
T ss_conf             9987408-6899977778621899999998643344123046--------------6---767054--------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC--
Q ss_conf             776779578999999987411446247776444756764135677515898602500000027852344566653113--
Q gi|254780821|r   97 SAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK--  174 (429)
Q Consensus        97 ~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k--  174 (429)
                                      ......+.|++|+|+|...... .+. -+|+++|||||+.||+|++| |+|+++.+|..+++  
T Consensus       154 ----------------~~~~~~~~~~~v~E~s~~~~~~-~~~-~~p~iaviTNI~~dHld~~~-s~e~y~~aK~~l~~~~  214 (451)
T 3lk7_A          154 ----------------VVQAANDKDTLVMELSSFQLMG-VKE-FRPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQM  214 (451)
T ss_dssp             ----------------HTTTCCTTCEEEEECCHHHHTT-CSS-CCCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTC
T ss_pred             ----------------HHHCCCCCCEEEEEECCCCCCC-CCC-CCCCEEEEECCHHHHCCCCC-CHHHHHHHHHHHHHCC
T ss_conf             ----------------4213589878999943321045-544-59869985071777637206-9889877755343146


Q ss_pred             -CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             -79833154447178988999986210566523576321---01258524443103333444444322221111146999
Q gi|254780821|r  175 -PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFY---AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAIC  250 (429)
Q Consensus       175 -~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aia  250 (429)
                       ++..+|++.+ ++... .+   ..........++.+..   .......+.+.. ........++++|.||++|+++|++
T Consensus       215 ~~~~~~v~n~d-d~~~~-~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~G~hnv~NalaA~a  288 (451)
T 3lk7_A          215 SSSDFLVLNFN-QGISK-EL---AKTTKATIVPFSTTEKVDGAYVQDKQLFYKG-ENIMSVDDIGVPGSHNVENALATIA  288 (451)
T ss_dssp             CTTSEEEEETT-SHHHH-HH---HTTCSSEEEEEESSSCCSSEEEETTEEEETT-EEEEEGGGSSSCSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCC-CHHHH-HH---HHHCCCCEEEECCCCCCCCCEEECEEEEECC-CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             66565333467-58999-99---8741773898447645563243030899757-1367652247764445660899999


Q ss_pred             HHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             9875320000110011222233-665303542287544457874599933-63215799888654331147777124311
Q gi|254780821|r  251 AVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVI  328 (429)
Q Consensus       251 a~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~  328 (429)
                      ++..+|+  +.+.|.++|++++ .|||||++..       .++..+|.|+ ++||.++.+.   ++.   .+.+++++++
T Consensus       289 ~a~~lGi--~~~~i~~~L~~f~~~~gR~e~i~~-------~~g~~iidD~~~~~~~s~~~a---l~~---~~~~~ii~i~  353 (451)
T 3lk7_A          289 VAKLAGI--SNQVIRETLSNFGGVKHRLQSLGK-------VHGISFYNDSKSTNILATQKA---LSG---FDNTKVILIA  353 (451)
T ss_dssp             HHHHHTC--CHHHHHHHHHHCCCCTTSSEEEEE-------ETTEEEEECTTCCSHHHHHHH---HHT---SCGGGEEEEE
T ss_pred             HHHHCCC--CHHHHHHHHHHCCCCHHHHEEEEC-------CCCEEEEECCCCHHHHHHHHH---HHH---CCCCCEEEEC
T ss_conf             9998699--999999999856665013157741-------388699956774169999999---974---7788728980


Q ss_pred             CCCC-CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCE
Q ss_conf             3467-989899999888638889998422889984212789899999998549978996998999999998603588679
Q gi|254780821|r  329 GMVE-GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPL  407 (429)
Q Consensus       329 G~~~-dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~  407 (429)
                      |+.. +++..++.+.+.+..+.++    +.         .+...+.+.+.+.+.++..+.++++|++.+.+.+  +++|+
T Consensus       354 gg~~~~~~~~~l~~~~~~~~~~ii----~g---------~~~~~i~~~~~~~~~~~~~~~d~~eAi~~a~~~~--~~gDi  418 (451)
T 3lk7_A          354 GGLDRGNEFDELIPDITGLKHMVV----LG---------ESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVA--QQGDV  418 (451)
T ss_dssp             CCSCCSCCCGGGHHHHTTCSEEEE----CS---------TTHHHHHHHHHHTTCCEEECSSHHHHHHHHHHHC--CTTCE
T ss_pred             CCCCCCCCHHHHHHHHHCCCEEEE----EC---------CCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHC--CCCCE
T ss_conf             785566659999999866988999----79---------9989999999866996897499999999999858--99799


Q ss_pred             EEEECC
Q ss_conf             999497
Q gi|254780821|r  408 ILIAGS  413 (429)
Q Consensus       408 VLV~GS  413 (429)
                      ||+.|+
T Consensus       419 VLls~a  424 (451)
T 3lk7_A          419 ILLSPA  424 (451)
T ss_dssp             EEECCS
T ss_pred             EEECCC
T ss_conf             997795