HHsearch results for GI: 254780821 and protein with PDBid: 3lk7_A
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=2.4e-42 Score=279.43 Aligned_cols=310 Identities=18% Similarity=0.233 Sum_probs=205.6
Q ss_pred CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCC
Q ss_conf 99588359839994589847999999999999789351413784110120089888477871558899999999986304
Q gi|254780821|r 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVK 96 (429)
Q Consensus 17 g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~ 96 (429)
..+..+. ++|+||||||||||+.|++++|+..|.+++.... . +.+...
T Consensus 106 ~~~~~~~-~vIgVTGT~GKTTt~~~l~~iL~~~~~~~~~~~~--------------~---~~~~~~-------------- 153 (451)
T 3lk7_A 106 AYLVSES-QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN--------------I---GFPASE-------------- 153 (451)
T ss_dssp HHHHCCS-EEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEET--------------S---SSCHHH--------------
T ss_pred HHHHHHC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCC--------------C---CCCCHH--------------
T ss_conf 9987408-6899977778621899999998643344123046--------------6---767054--------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC--
Q ss_conf 776779578999999987411446247776444756764135677515898602500000027852344566653113--
Q gi|254780821|r 97 SAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK-- 174 (429)
Q Consensus 97 ~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k-- 174 (429)
......+.|++|+|+|...... .+. -+|+++|||||+.||+|++| |+|+++.+|..+++
T Consensus 154 ----------------~~~~~~~~~~~v~E~s~~~~~~-~~~-~~p~iaviTNI~~dHld~~~-s~e~y~~aK~~l~~~~ 214 (451)
T 3lk7_A 154 ----------------VVQAANDKDTLVMELSSFQLMG-VKE-FRPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQM 214 (451)
T ss_dssp ----------------HTTTCCTTCEEEEECCHHHHTT-CSS-CCCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTC
T ss_pred ----------------HHHCCCCCCEEEEEECCCCCCC-CCC-CCCCEEEEECCHHHHCCCCC-CHHHHHHHHHHHHHCC
T ss_conf ----------------4213589878999943321045-544-59869985071777637206-9889877755343146
Q ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -79833154447178988999986210566523576321---01258524443103333444444322221111146999
Q gi|254780821|r 175 -PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFY---AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAIC 250 (429)
Q Consensus 175 -~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aia 250 (429)
++..+|++.+ ++... .+ ..........++.+.. .......+.+.. ........++++|.||++|+++|++
T Consensus 215 ~~~~~~v~n~d-d~~~~-~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~G~hnv~NalaA~a 288 (451)
T 3lk7_A 215 SSSDFLVLNFN-QGISK-EL---AKTTKATIVPFSTTEKVDGAYVQDKQLFYKG-ENIMSVDDIGVPGSHNVENALATIA 288 (451)
T ss_dssp CTTSEEEEETT-SHHHH-HH---HTTCSSEEEEEESSSCCSSEEEETTEEEETT-EEEEEGGGSSSCSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC-CHHHH-HH---HHHCCCCEEEECCCCCCCCCEEECEEEEECC-CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 66565333467-58999-99---8741773898447645563243030899757-1367652247764445660899999
Q ss_pred HHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 9875320000110011222233-665303542287544457874599933-63215799888654331147777124311
Q gi|254780821|r 251 AVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVI 328 (429)
Q Consensus 251 a~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~ 328 (429)
++..+|+ +.+.|.++|++++ .|||||++.. .++..+|.|+ ++||.++.+. ++. .+.+++++++
T Consensus 289 ~a~~lGi--~~~~i~~~L~~f~~~~gR~e~i~~-------~~g~~iidD~~~~~~~s~~~a---l~~---~~~~~ii~i~ 353 (451)
T 3lk7_A 289 VAKLAGI--SNQVIRETLSNFGGVKHRLQSLGK-------VHGISFYNDSKSTNILATQKA---LSG---FDNTKVILIA 353 (451)
T ss_dssp HHHHHTC--CHHHHHHHHHHCCCCTTSSEEEEE-------ETTEEEEECTTCCSHHHHHHH---HHT---SCGGGEEEEE
T ss_pred HHHHCCC--CHHHHHHHHHHCCCCHHHHEEEEC-------CCCEEEEECCCCHHHHHHHHH---HHH---CCCCCEEEEC
T ss_conf 9998699--999999999856665013157741-------388699956774169999999---974---7788728980
Q ss_pred CCCC-CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCE
Q ss_conf 3467-989899999888638889998422889984212789899999998549978996998999999998603588679
Q gi|254780821|r 329 GMVE-GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPL 407 (429)
Q Consensus 329 G~~~-dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~ 407 (429)
|+.. +++..++.+.+.+..+.++ +. .+...+.+.+.+.+.++..+.++++|++.+.+.+ +++|+
T Consensus 354 gg~~~~~~~~~l~~~~~~~~~~ii----~g---------~~~~~i~~~~~~~~~~~~~~~d~~eAi~~a~~~~--~~gDi 418 (451)
T 3lk7_A 354 GGLDRGNEFDELIPDITGLKHMVV----LG---------ESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVA--QQGDV 418 (451)
T ss_dssp CCSCCSCCCGGGHHHHTTCSEEEE----CS---------TTHHHHHHHHHHTTCCEEECSSHHHHHHHHHHHC--CTTCE
T ss_pred CCCCCCCCHHHHHHHHHCCCEEEE----EC---------CCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHC--CCCCE
T ss_conf 785566659999999866988999----79---------9989999999866996897499999999999858--99799
Q ss_pred EEEECC
Q ss_conf 999497
Q gi|254780821|r 408 ILIAGS 413 (429)
Q Consensus 408 VLV~GS 413 (429)
||+.|+
T Consensus 419 VLls~a 424 (451)
T 3lk7_A 419 ILLSPA 424 (451)
T ss_dssp EEECCS
T ss_pred EEECCC
T ss_conf 997795