RPSBLAST alignment for GI: 254780821 and conserved domain: TIGR01143

>gnl|CDD|162224 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. Length = 417
 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%)

Query: 121 DCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCP 178
           D A++E+G    G +     I K  ++VIT+I   H +  G ++  IA+ K  I++    
Sbjct: 127 DYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFG-SLEGIAEAKGEILQGLKE 185

Query: 179 ---VVIG--HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV 233
               VI      + +  + L +KA      +   G DF A       +    +  T  T+
Sbjct: 186 NGIAVINADDPAFAKFAKRLPNKAILS---FGFEGGDFSAA-----DISYSALGSTGFTL 237

Query: 234 ----------LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQW-FGRLQKITE 282
                     L L+G H  +NA  A       G  LE+  I   L  ++   GR +  T+
Sbjct: 238 VAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEE--IAEGLAELKLVKGRFEIQTK 295

Query: 283 G 283
            
Sbjct: 296 N 296