RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780821|ref|YP_003065234.1| FolC bifunctional protein
[Candidatus Liberibacter asiaticus str. psy62]
         (429 letters)



>gnl|CDD|30633 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].
          Length = 427

 Score =  343 bits (880), Expect = 7e-95
 Identities = 159/426 (37%), Positives = 228/426 (53%), Gaps = 34/426 (7%)

Query: 5   SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64
            L ++  LLE LG PQ + PPVIH+ GTNGKGS  +F + +L  +G  V V+TSPHL+ +
Sbjct: 26  GLERISRLLERLGNPQ-KSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSF 84

Query: 65  NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQN---LTIFELSIATALVLFSKYPAD 121
           NER R+      G  + D EL   F RV     + +   LT FE+  A A + F++   D
Sbjct: 85  NERIRIN-----GEPISDEELAAAFERVEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVD 139

Query: 122 CAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVI 181
            AI+EVGLGG LDATN+IE   VSVITSI LDH   LG+T+ +IA++K+GIIK G P VI
Sbjct: 140 VAILEVGLGGRLDATNVIEPD-VSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVI 198

Query: 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQD--KISQTNLTVLGLVGE 239
           G Q   E   ++  +AE++G P  V G DF   E+     +Q    +    L +LG  G 
Sbjct: 199 GEQQPPEALNVIAERAEELGAPLFVLGPDFQVLEEGNGFSFQGGGGLLDLPLPLLG--GH 256

Query: 240 HQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299
           HQ  NAA AI A++  G  + +E I   L +V W GRL++++E PL         + +DG
Sbjct: 257 HQIENAALAIAALEALGKEISEEAIRKGLANVDWPGRLERLSENPL---------ILLDG 307

Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359
            HNP+A   +++ +  L     +   LV GM++ K     L A + +   + +  L    
Sbjct: 308 AHNPHAARALAETLKTLFNDRPRL-TLVFGMLKDKDIAGMLAALLPIVDEIYTTPL---P 363

Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419
             R   ++  + L+  A + G        + EAL    +  +E    L+L+ GSLYLAGE
Sbjct: 364 WPR---ALDAEELLAFAGERGGV--ELDDVAEALELALEKADE--DDLVLVTGSLYLAGE 416

Query: 420 ALRENG 425
            L    
Sbjct: 417 VLELLK 422


>gnl|CDD|37736 KOG2525, KOG2525, KOG2525, Folylpolyglutamate synthase [Coenzyme
           transport and metabolism].
          Length = 496

 Score =  191 bits (486), Expect = 3e-49
 Identities = 131/458 (28%), Positives = 193/458 (42%), Gaps = 74/458 (16%)

Query: 3   ADSLLKMGYLLEDLGRP--QDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH 60
             +L +M  LLE LG P  Q+ L  +IH+ GT GKGS  +F++ +L   GL    +TSPH
Sbjct: 50  GLTLPRMRKLLERLGNPEDQNSLN-IIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPH 108

Query: 61  LIRWNERFRLGVKGGRGRLVEDVELLDVFRRV------RRVKSAQNLTIFELSIATALVL 114
           L+   ER R+      G+ + + +    F  V       ++K     T FE     A  +
Sbjct: 109 LLSVRERIRIN-----GQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHV 163

Query: 115 FSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK 174
           F K   D A+IEVGLGG LDATN+IEK  V  ITS+ LDH   LGNT+S IA +K+GI K
Sbjct: 164 FVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFK 223

Query: 175 PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVL 234
            G P     Q   E   +L  +A ++G P  V      A+E +                L
Sbjct: 224 EGVPAFTVPQP-PEALNVLKERASELGVPLFVV-PPLEAYELSG-------------VNL 268

Query: 235 GLVGEHQYINAATAI------------------CAVQMAGFTLEKECINAALQSVQWFGR 276
           GL+G HQ+ NA+ A+                   A+Q +G           L S  W GR
Sbjct: 269 GLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPAFLS--GLASTDWPGR 326

Query: 277 LQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISK-LKGSSNKPFYLVIGMVEGKK 335
           LQ +  G  +          +DG H   +    +K   K ++G       +++      +
Sbjct: 327 LQILEYGRGV-------TWLLDGAHTKESAEACAKWFRKAVRGLKKLTSLILLFNCTSDR 379

Query: 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSR 395
                     L P++   ++I  G    S+   P +               +S  E L+ 
Sbjct: 380 ------DPPLLLPLLKPDAVI--GTRFSSVVFMPNITSSSPVGSADSISLNTSTEEQLNW 431

Query: 396 VRKI---------NEELPPPLILIAGSLYLAGEALREN 424
              +         +E       ++ GSLYLA E LR++
Sbjct: 432 QNDLQSVWEELKESEGKTEDPSIVFGSLYLAYELLRDD 469


>gnl|CDD|31113 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell
           envelope biogenesis, outer membrane].
          Length = 451

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 71/354 (20%), Positives = 121/354 (34%), Gaps = 74/354 (20%)

Query: 4   DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63
           D+L  +G L +     Q     VI I G+NGK +       +L T G    VH +P    
Sbjct: 85  DTLEALGKLAKAY--RQKFNAKVIAITGSNGKTTTKEMLAAILSTKG---KVHATPG--- 136

Query: 64  WNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCA 123
            N    +G+                            LT+  L   T          + A
Sbjct: 137 -NFNNEIGLP---------------------------LTLLRLPADT----------EYA 158

Query: 124 IIEVG--LGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK--PGCPV 179
           ++E+G    G +   + I +  ++VIT+I   H +  G +   IA+ K+ I+       +
Sbjct: 159 VLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAGLRPEGI 217

Query: 180 VIGHQVYDEVREILVSKAE-------KMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLT 232
            I +   + + +   +K          +    +    + +  E+        +  +    
Sbjct: 218 AILNA-DNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFE 276

Query: 233 VLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDH 292
            L L G H   NA  A       G  LE+  I A L+ +       K  +G L   L  +
Sbjct: 277 -LPLPGRHNVTNALAAAALALELGLDLEE--IAAGLKEL-------KPVKGRLEVILLAN 326

Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIG-MVEGKKYGRYLEAFVE 345
            +  ID  +N N    +   +  L     +    V+G M+E    G   E   E
Sbjct: 327 GKTLIDDSYNANPD-SMRAALDLLAALPGRKGIAVLGDMLE---LGEESEELHE 376


>gnl|CDD|31112 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell
           envelope biogenesis, outer membrane].
          Length = 475

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 85/417 (20%), Positives = 140/417 (33%), Gaps = 74/417 (17%)

Query: 17  GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76
           G P  +L  VI + GTNGK +  S   ++L+  G                     + G  
Sbjct: 85  GLPSGKLK-VIGVTGTNGKTTTTSLLAQILKKLGKKT-----------------ALIGTE 126

Query: 77  GRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDAT 136
           G  +              ++     T   L +   L       A+ A++EV   G +   
Sbjct: 127 GDELSP----------GILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVSSHGLVQGR 176

Query: 137 NIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVY---DEVREIL 193
                  V V T++S DH      T+      K+ + +       G  V    D      
Sbjct: 177 VEGVTFDVGVFTNLSRDHLD-YHGTMEYYGAAKAVLFESLPH--SGEAVINPDDGHGLDY 233

Query: 194 VSKAEKMGCPYNVYGDDF-YAFEKNKCLVYQDKISQTNLTV--------LGLVGEHQYIN 244
             + +     Y  YG DF       + +      S              L L G     N
Sbjct: 234 KERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNVYN 293

Query: 245 AATAICAVQMAGFTLEKECINAALQSVQW-FGRLQKITEGPLLNKLPDHSEVWIDGGHNP 303
           A  A+ A    G  LE   I A L++++   GR++ +  G  L        V +D  HNP
Sbjct: 294 ALAAVAAALALGVDLED--ILAGLETLKPVPGRMELVNIGGKL--------VIVDYAHNP 343

Query: 304 NAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKYGRYLEAFV--ELSPIVLSVSLICRGR 360
           +    + K +  ++  +     +V G   +  K  R     +  +L+ IV+  S   R  
Sbjct: 344 DG---LEKALRAVRLHAAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPRSE 400

Query: 361 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEEL----PPPLILIAGS 413
           +       P V++ +    G +A     +IE   R   I + L       ++LIAG 
Sbjct: 401 D-------PAVILADILA-GIEAPEKYEIIE--DREEAIRKALDLAKEGDVVLIAGK 447


>gnl|CDD|31114 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell
           envelope biogenesis, outer membrane].
          Length = 448

 Score = 37.2 bits (86), Expect = 0.010
 Identities = 69/385 (17%), Positives = 124/385 (32%), Gaps = 93/385 (24%)

Query: 24  PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDV 83
            P++ I GTNGK +  S    LL+ +G                     + G  G      
Sbjct: 110 APIVAITGTNGKTTTTSLIAHLLKAAG-----------------LDALLGGNIG-----T 147

Query: 84  ELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVA 143
             L++           ++ + ELS        S  P                        
Sbjct: 148 PALELLE----QAEPADVYVLELSSFQLETTSSLRPE----------------------- 180

Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203
           ++VI +IS DH    G+ +   A  K  I++    V + +     ++ +     +     
Sbjct: 181 IAVILNISEDHLDRHGS-MENYAAAKLRILEGQTEVAVINADDAYLKTLADEATKA---- 235

Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTV-----LGLVGEHQYINAATAICAVQMAGFT 258
             V    F     +   +Y  K+      +     L L G H   NA  A+   +  G  
Sbjct: 236 -RVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARALGVP 294

Query: 259 LEKECINAALQSVQWF----GRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEIS 314
            E     A L+++  F     RL+ + E            ++I+     N    ++  +S
Sbjct: 295 PE-----AILEALSSFTGLPHRLEFVGEK--------DGVLFINDSKATNVDATLAA-LS 340

Query: 315 KLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQ 374
              G    P  L+ G   G   G       E+   V+   L+  G + + I+        
Sbjct: 341 GFDG----PVILIAG---GDDKGADFSPLAEILAKVI-KKLVLIGEDAEKIA-------A 385

Query: 375 EAKKLGFQAMACSSMIEALSRVRKI 399
             K+ G   + C ++ EA+   R++
Sbjct: 386 ALKEAGPSLVICETLEEAVQLAREL 410


>gnl|CDD|147498 pfam05343, Peptidase_M42, M42 glutamyl aminopeptidase.  These
           peptidases are found in Archaea and Bacteria. The
           example in Lactococcus lactis, PepA, aids growth on
           milk. Pyrococcus horikoshii contain a thermostable
           de-blocking aminopeptidase member of this family used
           commercially for N-terminal protein sequencing.
          Length = 292

 Score = 36.8 bits (86), Expect = 0.011
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 19/89 (21%)

Query: 126 EVGLGGSLDATNIIE-KVAVSVITSISLD------HEKILGNTVSAIAKDKSGIIKPGCP 178
           EVGL G+  +   I+   A++V  + + D      ++  LG       KD SGI  P   
Sbjct: 167 EVGLRGAKTSAFKIKPDEAIAVDVTPAGDTPGSDEYKAPLGKGPVIRVKDASGIYHPK-- 224

Query: 179 VVIGHQVYDEVREILVSKAEKMGCPYNVY 207
                     +R+ L+  A+K   PY V 
Sbjct: 225 ----------LRKFLLELAKKNNIPYQVE 243


>gnl|CDD|31554 COG1363, FrvX, Cellulase M and related proteins [Carbohydrate
           transport and metabolism].
          Length = 355

 Score = 36.7 bits (85), Expect = 0.013
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 19/89 (21%)

Query: 126 EVGLGGSLDATNII-EKVAVSVITSISLDHEKI------LGNTVSAIAKDKSGIIKPGCP 178
           EVGL G+  +   I   +A++V  + + D   +      LG       KD SGI  P   
Sbjct: 213 EVGLRGAKTSAFRIKPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPK-- 270

Query: 179 VVIGHQVYDEVREILVSKAEKMGCPYNVY 207
                     +R+ L+  AEK   PY V 
Sbjct: 271 ----------LRKFLLELAEKNNIPYQVD 289


>gnl|CDD|32227 COG2044, COG2044, Predicted peroxiredoxins [General function
           prediction only].
          Length = 120

 Score = 28.3 bits (63), Expect = 4.5
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 372 LMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALRENGV 426
           L+++A + G +   C    E   ++R I E+     + I G+      A   + V
Sbjct: 67  LIKQAIEAGVKIYVC----EQSLKLRGIKEDDLVEGVKIVGAATFLLLASEADVV 117


>gnl|CDD|31708 COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell
           envelope biogenesis, outer membrane].
          Length = 419

 Score = 27.5 bits (61), Expect = 7.7
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 43  QRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLD 87
              LE +     V   P+   +++     ++ G G  VED +LL 
Sbjct: 333 HNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLA 377


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0798    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,065,559
Number of extensions: 267320
Number of successful extensions: 673
Number of sequences better than 10.0: 1
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 17
Length of query: 429
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 332
Effective length of database: 4,167,664
Effective search space: 1383664448
Effective search space used: 1383664448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)