RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] (429 letters) >gnl|CDD|30633 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]. Length = 427 Score = 343 bits (880), Expect = 7e-95 Identities = 159/426 (37%), Positives = 228/426 (53%), Gaps = 34/426 (7%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 L ++ LLE LG PQ + PPVIH+ GTNGKGS +F + +L +G V V+TSPHL+ + Sbjct: 26 GLERISRLLERLGNPQ-KSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSF 84 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQN---LTIFELSIATALVLFSKYPAD 121 NER R+ G + D EL F RV + + LT FE+ A A + F++ D Sbjct: 85 NERIRIN-----GEPISDEELAAAFERVEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVD 139 Query: 122 CAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVI 181 AI+EVGLGG LDATN+IE VSVITSI LDH LG+T+ +IA++K+GIIK G P VI Sbjct: 140 VAILEVGLGGRLDATNVIEPD-VSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVI 198 Query: 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQD--KISQTNLTVLGLVGE 239 G Q E ++ +AE++G P V G DF E+ +Q + L +LG G Sbjct: 199 GEQQPPEALNVIAERAEELGAPLFVLGPDFQVLEEGNGFSFQGGGGLLDLPLPLLG--GH 256 Query: 240 HQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299 HQ NAA AI A++ G + +E I L +V W GRL++++E PL + +DG Sbjct: 257 HQIENAALAIAALEALGKEISEEAIRKGLANVDWPGRLERLSENPL---------ILLDG 307 Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359 HNP+A +++ + L + LV GM++ K L A + + + + L Sbjct: 308 AHNPHAARALAETLKTLFNDRPRL-TLVFGMLKDKDIAGMLAALLPIVDEIYTTPL---P 363 Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419 R ++ + L+ A + G + EAL + +E L+L+ GSLYLAGE Sbjct: 364 WPR---ALDAEELLAFAGERGGV--ELDDVAEALELALEKADE--DDLVLVTGSLYLAGE 416 Query: 420 ALRENG 425 L Sbjct: 417 VLELLK 422 >gnl|CDD|37736 KOG2525, KOG2525, KOG2525, Folylpolyglutamate synthase [Coenzyme transport and metabolism]. Length = 496 Score = 191 bits (486), Expect = 3e-49 Identities = 131/458 (28%), Positives = 193/458 (42%), Gaps = 74/458 (16%) Query: 3 ADSLLKMGYLLEDLGRP--QDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH 60 +L +M LLE LG P Q+ L +IH+ GT GKGS +F++ +L GL +TSPH Sbjct: 50 GLTLPRMRKLLERLGNPEDQNSLN-IIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPH 108 Query: 61 LIRWNERFRLGVKGGRGRLVEDVELLDVFRRV------RRVKSAQNLTIFELSIATALVL 114 L+ ER R+ G+ + + + F V ++K T FE A + Sbjct: 109 LLSVRERIRIN-----GQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHV 163 Query: 115 FSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK 174 F K D A+IEVGLGG LDATN+IEK V ITS+ LDH LGNT+S IA +K+GI K Sbjct: 164 FVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFK 223 Query: 175 PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVL 234 G P Q E +L +A ++G P V A+E + L Sbjct: 224 EGVPAFTVPQP-PEALNVLKERASELGVPLFVV-PPLEAYELSG-------------VNL 268 Query: 235 GLVGEHQYINAATAI------------------CAVQMAGFTLEKECINAALQSVQWFGR 276 GL+G HQ+ NA+ A+ A+Q +G L S W GR Sbjct: 269 GLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPAFLS--GLASTDWPGR 326 Query: 277 LQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISK-LKGSSNKPFYLVIGMVEGKK 335 LQ + G + +DG H + +K K ++G +++ + Sbjct: 327 LQILEYGRGV-------TWLLDGAHTKESAEACAKWFRKAVRGLKKLTSLILLFNCTSDR 379 Query: 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSR 395 L P++ ++I G S+ P + +S E L+ Sbjct: 380 ------DPPLLLPLLKPDAVI--GTRFSSVVFMPNITSSSPVGSADSISLNTSTEEQLNW 431 Query: 396 VRKI---------NEELPPPLILIAGSLYLAGEALREN 424 + +E ++ GSLYLA E LR++ Sbjct: 432 QNDLQSVWEELKESEGKTEDPSIVFGSLYLAYELLRDD 469 >gnl|CDD|31113 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]. Length = 451 Score = 51.1 bits (122), Expect = 5e-07 Identities = 71/354 (20%), Positives = 121/354 (34%), Gaps = 74/354 (20%) Query: 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63 D+L +G L + Q VI I G+NGK + +L T G VH +P Sbjct: 85 DTLEALGKLAKAY--RQKFNAKVIAITGSNGKTTTKEMLAAILSTKG---KVHATPG--- 136 Query: 64 WNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCA 123 N +G+ LT+ L T + A Sbjct: 137 -NFNNEIGLP---------------------------LTLLRLPADT----------EYA 158 Query: 124 IIEVG--LGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK--PGCPV 179 ++E+G G + + I + ++VIT+I H + G + IA+ K+ I+ + Sbjct: 159 VLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAGLRPEGI 217 Query: 180 VIGHQVYDEVREILVSKAE-------KMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLT 232 I + + + + +K + + + + E+ + + Sbjct: 218 AILNA-DNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFE 276 Query: 233 VLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDH 292 L L G H NA A G LE+ I A L+ + K +G L L + Sbjct: 277 -LPLPGRHNVTNALAAAALALELGLDLEE--IAAGLKEL-------KPVKGRLEVILLAN 326 Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIG-MVEGKKYGRYLEAFVE 345 + ID +N N + + L + V+G M+E G E E Sbjct: 327 GKTLIDDSYNANPD-SMRAALDLLAALPGRKGIAVLGDMLE---LGEESEELHE 376 >gnl|CDD|31112 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]. Length = 475 Score = 49.6 bits (118), Expect = 2e-06 Identities = 85/417 (20%), Positives = 140/417 (33%), Gaps = 74/417 (17%) Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76 G P +L VI + GTNGK + S ++L+ G + G Sbjct: 85 GLPSGKLK-VIGVTGTNGKTTTTSLLAQILKKLGKKT-----------------ALIGTE 126 Query: 77 GRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDAT 136 G + ++ T L + L A+ A++EV G + Sbjct: 127 GDELSP----------GILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVSSHGLVQGR 176 Query: 137 NIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVY---DEVREIL 193 V V T++S DH T+ K+ + + G V D Sbjct: 177 VEGVTFDVGVFTNLSRDHLD-YHGTMEYYGAAKAVLFESLPH--SGEAVINPDDGHGLDY 233 Query: 194 VSKAEKMGCPYNVYGDDF-YAFEKNKCLVYQDKISQTNLTV--------LGLVGEHQYIN 244 + + Y YG DF + + S L L G N Sbjct: 234 KERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNVYN 293 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQW-FGRLQKITEGPLLNKLPDHSEVWIDGGHNP 303 A A+ A G LE I A L++++ GR++ + G L V +D HNP Sbjct: 294 ALAAVAAALALGVDLED--ILAGLETLKPVPGRMELVNIGGKL--------VIVDYAHNP 343 Query: 304 NAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKYGRYLEAFV--ELSPIVLSVSLICRGR 360 + + K + ++ + +V G + K R + +L+ IV+ S R Sbjct: 344 DG---LEKALRAVRLHAAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPRSE 400 Query: 361 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEEL----PPPLILIAGS 413 + P V++ + G +A +IE R I + L ++LIAG Sbjct: 401 D-------PAVILADILA-GIEAPEKYEIIE--DREEAIRKALDLAKEGDVVLIAGK 447 >gnl|CDD|31114 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]. Length = 448 Score = 37.2 bits (86), Expect = 0.010 Identities = 69/385 (17%), Positives = 124/385 (32%), Gaps = 93/385 (24%) Query: 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDV 83 P++ I GTNGK + S LL+ +G + G G Sbjct: 110 APIVAITGTNGKTTTTSLIAHLLKAAG-----------------LDALLGGNIG-----T 147 Query: 84 ELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVA 143 L++ ++ + ELS S P Sbjct: 148 PALELLE----QAEPADVYVLELSSFQLETTSSLRPE----------------------- 180 Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203 ++VI +IS DH G+ + A K I++ V + + ++ + + Sbjct: 181 IAVILNISEDHLDRHGS-MENYAAAKLRILEGQTEVAVINADDAYLKTLADEATKA---- 235 Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTV-----LGLVGEHQYINAATAICAVQMAGFT 258 V F + +Y K+ + L L G H NA A+ + G Sbjct: 236 -RVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARALGVP 294 Query: 259 LEKECINAALQSVQWF----GRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEIS 314 E A L+++ F RL+ + E ++I+ N ++ +S Sbjct: 295 PE-----AILEALSSFTGLPHRLEFVGEK--------DGVLFINDSKATNVDATLAA-LS 340 Query: 315 KLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQ 374 G P L+ G G G E+ V+ L+ G + + I+ Sbjct: 341 GFDG----PVILIAG---GDDKGADFSPLAEILAKVI-KKLVLIGEDAEKIA-------A 385 Query: 375 EAKKLGFQAMACSSMIEALSRVRKI 399 K+ G + C ++ EA+ R++ Sbjct: 386 ALKEAGPSLVICETLEEAVQLAREL 410 >gnl|CDD|147498 pfam05343, Peptidase_M42, M42 glutamyl aminopeptidase. These peptidases are found in Archaea and Bacteria. The example in Lactococcus lactis, PepA, aids growth on milk. Pyrococcus horikoshii contain a thermostable de-blocking aminopeptidase member of this family used commercially for N-terminal protein sequencing. Length = 292 Score = 36.8 bits (86), Expect = 0.011 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 19/89 (21%) Query: 126 EVGLGGSLDATNIIE-KVAVSVITSISLD------HEKILGNTVSAIAKDKSGIIKPGCP 178 EVGL G+ + I+ A++V + + D ++ LG KD SGI P Sbjct: 167 EVGLRGAKTSAFKIKPDEAIAVDVTPAGDTPGSDEYKAPLGKGPVIRVKDASGIYHPK-- 224 Query: 179 VVIGHQVYDEVREILVSKAEKMGCPYNVY 207 +R+ L+ A+K PY V Sbjct: 225 ----------LRKFLLELAKKNNIPYQVE 243 >gnl|CDD|31554 COG1363, FrvX, Cellulase M and related proteins [Carbohydrate transport and metabolism]. Length = 355 Score = 36.7 bits (85), Expect = 0.013 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 19/89 (21%) Query: 126 EVGLGGSLDATNII-EKVAVSVITSISLDHEKI------LGNTVSAIAKDKSGIIKPGCP 178 EVGL G+ + I +A++V + + D + LG KD SGI P Sbjct: 213 EVGLRGAKTSAFRIKPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPK-- 270 Query: 179 VVIGHQVYDEVREILVSKAEKMGCPYNVY 207 +R+ L+ AEK PY V Sbjct: 271 ----------LRKFLLELAEKNNIPYQVD 289 >gnl|CDD|32227 COG2044, COG2044, Predicted peroxiredoxins [General function prediction only]. Length = 120 Score = 28.3 bits (63), Expect = 4.5 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 372 LMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALRENGV 426 L+++A + G + C E ++R I E+ + I G+ A + V Sbjct: 67 LIKQAIEAGVKIYVC----EQSLKLRGIKEDDLVEGVKIVGAATFLLLASEADVV 117 >gnl|CDD|31708 COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]. Length = 419 Score = 27.5 bits (61), Expect = 7.7 Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 43 QRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLD 87 LE + V P+ +++ ++ G G VED +LL Sbjct: 333 HNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLA 377 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.137 0.395 Gapped Lambda K H 0.267 0.0798 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,065,559 Number of extensions: 267320 Number of successful extensions: 673 Number of sequences better than 10.0: 1 Number of HSP's gapped: 661 Number of HSP's successfully gapped: 17 Length of query: 429 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 332 Effective length of database: 4,167,664 Effective search space: 1383664448 Effective search space used: 1383664448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.4 bits)