RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780821|ref|YP_003065234.1| FolC bifunctional protein
[Candidatus Liberibacter asiaticus str. psy62]
(429 letters)
>gnl|CDD|162392 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate
synthase. A mutation study of the FolC gene of E. coli
suggests that both activitities belong to the same
active site. Because some examples are monofunctional
(and these cannot be separated phylogenetically), the
model is treated as subfamily, not equivalog.
Length = 397
Score = 305 bits (783), Expect = 1e-83
Identities = 151/424 (35%), Positives = 215/424 (50%), Gaps = 34/424 (8%)
Query: 6 LLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWN 65
L +M LLE LG PQD L PVIH+ GTNGKGS +F + +L +G V + TSPHL+ +N
Sbjct: 1 LERMKKLLEALGNPQD-LYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFN 59
Query: 66 ERFRLGVKGGRGRLVEDVELLDVFRRVR-RVKS-AQNLTIFELSIATALVLFSKYPADCA 123
ER R+ G + D EL F +VR ++ +Q T FEL A + F++ D A
Sbjct: 60 ERIRIN-----GEPISDEELAQAFEQVRPILEKLSQQPTYFELLTLLAFLYFAQAQVDVA 114
Query: 124 IIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183
++EVGLGG LDATN+IE + VSVITSI LDH +ILG+T+ IA +K+GIIK G P+V G
Sbjct: 115 VLEVGLGGRLDATNVIEPL-VSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVTGP 173
Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDF-YAFEKNKCLVYQDKISQTNLTVLGLVGEHQY 242
Q E +L KA++ G P V G DF Y+ L + L L+G+HQ
Sbjct: 174 QE-PEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQA 232
Query: 243 INAATAICAV---QMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299
NAA A+ A+ L +E I L + W GRL+ ++E D+ + +DG
Sbjct: 233 ENAALALAALEVLGKQRPKLSEEAIRKGLANTIWPGRLEILSE--------DNPNILLDG 284
Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359
HNP++ +++ K + +P L+ G + K L + + V+
Sbjct: 285 AHNPHSAEALAEWFKKRF--NGRPIILLFGALADKDAAAMLAPLKPVVDKEVFVTPFDYP 342
Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419
R + L A+ G + EAL+ + E IL+ GSLYL GE
Sbjct: 343 R-----ADDAADLAALAETFGKE--TVEDWREALALALNASAE---DDILVTGSLYLVGE 392
Query: 420 ALRE 423
+
Sbjct: 393 VRKL 396
>gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase.
Length = 510
Score = 182 bits (464), Expect = 1e-46
Identities = 131/460 (28%), Positives = 203/460 (44%), Gaps = 56/460 (12%)
Query: 6 LLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWN 65
L +M L++ LG P + +H+ GT GKGS A+F +L G SV +TSPHL
Sbjct: 58 LGRMRRLMDRLGNPHSKFK-AVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIR 116
Query: 66 ERFRLGVKGGRGRLVEDVELLDVFRRVR----RVKSAQN--LTIFELSIATALVLFSKYP 119
ER +G G V L D+F ++ +N LT FE+ A A LF++
Sbjct: 117 ERISVGKLGKP---VSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQEN 173
Query: 120 ADCAIIEVGLGGSLDATNII--EKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC 177
D A+IE GLGG+ DATN+I +A SVIT+I +H LG ++ +IA KSGIIK G
Sbjct: 174 VDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGR 233
Query: 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKN-----KCLVYQD----KISQ 228
PVV+G + IL KA M P A + K ++ + +
Sbjct: 234 PVVLGGPFLPHIESILRDKASSMNSPV------VSASDPGVRSSIKGIITDNGKPCQSCD 287
Query: 229 TNLTV--------------LGLVGEHQYINAATAICA---VQMAGFTLEKECINAALQSV 271
+ V L ++G HQ NA TA CA ++ G+ + I A L++
Sbjct: 288 IVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRISDASIRAGLENT 347
Query: 272 QWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV 331
GR Q +T + V +DG H + + I LV+ M
Sbjct: 348 NLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTAFPE--ARLALVVAMA 405
Query: 332 EGKKYGRYLEAFV---ELSPIVLSVSLICRGRERQ-SISITPKVLMQEAKKLGFQAMACS 387
K + + F+ + + L+ + I G+ R S S + ++ A +LG + +
Sbjct: 406 SDKDHLAFASEFLSGLKPEAVFLTEADIAGGKSRSTSASALKEAWIKAAPELGIETLLAE 465
Query: 388 ------SMIEALSRVRKINEELPPPLILIAGSLYLAGEAL 421
S+++A + +RK P ++ + GSL++ L
Sbjct: 466 NNSLLKSLVDASAILRKARTLDPSSVVCVTGSLHIVSAVL 505
>gnl|CDD|178469 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase.
Length = 530
Score = 167 bits (426), Expect = 4e-42
Identities = 103/300 (34%), Positives = 142/300 (47%), Gaps = 45/300 (15%)
Query: 26 VIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVEL 85
VIH+ GT GKGS +F++ +L G + TSPHLI ERFRL G + + +
Sbjct: 63 VIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLD-----GVDISEEKF 117
Query: 86 LDVF---RRVRRVKSAQNL---TIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNII 139
L F + K+ ++L F A +FS D AI+EVGLGG LDATN++
Sbjct: 118 LRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVV 177
Query: 140 EKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEK 199
+K V ITS+ DH +ILG+T+ IA +K+GI KPG P Q DE +L +A +
Sbjct: 178 QKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQP-DEAMRVLEERASE 236
Query: 200 MGCPYNVYGD-DFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAI----CAVQM 254
+G P V D Y K LGL GEHQY+NA A+ +Q
Sbjct: 237 LGVPLQVVEPLDSYGLSGLK---------------LGLAGEHQYLNAGLAVALCSTWLQR 281
Query: 255 AGFTLEKECINAA----------LQSVQWFGRLQKITEGPLLNKLPDHSEVW-IDGGHNP 303
G E E + A L + GR Q + + +N V+ +DG H+P
Sbjct: 282 TG-HEEFEALLQAGTLPEQFIKGLSTASLQGRAQVVPD-SYINSEDSGDLVFYLDGAHSP 339
>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/
dihydrofolate synthase; Provisional.
Length = 416
Score = 147 bits (374), Expect = 4e-36
Identities = 100/332 (30%), Positives = 159/332 (47%), Gaps = 31/332 (9%)
Query: 9 MGYLLEDLGRPQDRL------PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLI 62
+G LE + + RL P V + GTNGKG+ + +L +G V V++SPHL+
Sbjct: 30 LG--LERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLV 87
Query: 63 RWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADC 122
R+ ER R+ +G+ + + F + + +LT FE +AL LF + D
Sbjct: 88 RYTERVRI-----QGQELPESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDV 142
Query: 123 AIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIG 182
I+EVGLGG LDATNI++ V+V+TSI+LDH LG +I ++K+GI + P V+G
Sbjct: 143 VILEVGLGGRLDATNIVD-ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVG 201
Query: 183 HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQY 242
++ + A++ G G D+ + + D L L L
Sbjct: 202 EP---DMPSTIADVAQEKGALLQRRGVDWNYSVTDHDWAFSDG--DGTLENLPLPNVPL- 255
Query: 243 INAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHN 302
NAATA+ A++ +G + ++ I + S GR Q ++E P + +D HN
Sbjct: 256 PNAATALAALRASGLEVSEQAIRDGIASAILPGRFQIVSESPRV---------ILDVAHN 306
Query: 303 PNAGLVVSKEISKLKGSSNKPFYLVIGMVEGK 334
P+A ++ + L N VIGM+ K
Sbjct: 307 PHAAEYLTGRLKAL--PKNGRVLAVIGMLHDK 336
>gnl|CDD|162224 TIGR01143, murF,
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase. This family consists of the strictly bacterial
MurF gene of peptidoglycan biosynthesis. This enzyme is
almost always
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a
few species, MurE adds lysine rather than
diaminopimelate. This enzyme acts on the product from
MurE activity, and so is also subfamily rather than
equivalog. Staphylococcus aureus is an example of
species in this MurF protein would differ.
Length = 417
Score = 41.1 bits (97), Expect = 5e-04
Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%)
Query: 121 DCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCP 178
D A++E+G G + I K ++VIT+I H + G ++ IA+ K I++
Sbjct: 127 DYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFG-SLEGIAEAKGEILQGLKE 185
Query: 179 ---VVIG--HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV 233
VI + + + L +KA + G DF A + + T T+
Sbjct: 186 NGIAVINADDPAFAKFAKRLPNKAILS---FGFEGGDFSAA-----DISYSALGSTGFTL 237
Query: 234 ----------LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQW-FGRLQKITE 282
L L+G H +NA A G LE+ I L ++ GR + T+
Sbjct: 238 VAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEE--IAEGLAELKLVKGRFEIQTK 295
Query: 283 G 283
Sbjct: 296 N 296
>gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase; Provisional.
Length = 958
Score = 40.1 bits (94), Expect = 0.001
Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 32/228 (14%)
Query: 123 AIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII----KPG 176
A+ E+G+ G + I V+++T+ +H++ + + V A+A+ K II + G
Sbjct: 661 AVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHS-VEAVARAKGEIIAALPEDG 719
Query: 177 CPVVIGHQVYDEVREILVSKAEKMGCPY----NVYGDDF------YAFEKNKCLVYQDKI 226
VV G Y + L + +VY + +C V
Sbjct: 720 VAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPA- 778
Query: 227 SQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWF-GRLQKITEGPL 285
+ L L+GEH NA AI AG +L++ A L+ Q GR+Q+
Sbjct: 779 GSAEVY-LPLIGEHNLRNALAAIACALAAGASLKQIR--AGLERFQPVAGRMQRRRL--- 832
Query: 286 LNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIG-MVE 332
ID +N N + I L N P LV+G M+E
Sbjct: 833 -----SCGTRIIDDTYNANP-DSMRAAIDVLAELPNGPRALVLGDMLE 874
Score = 32.8 bits (75), Expect = 0.17
Identities = 62/306 (20%), Positives = 102/306 (33%), Gaps = 61/306 (19%)
Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76
GRP ++L ++ + GTNGK S A +LL G G G
Sbjct: 106 GRPSEQLS-LVAVTGTNGKTSCAQLLAQLLTRLGKPC-----------------GSIGTL 147
Query: 77 GRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV---GLG-GS 132
G ++ + T + + L AD +E GL G
Sbjct: 148 GARLDGRLI-----------PGSLTTPDAIILHRILARMRAAGADAVAMEASSHGLEQGR 196
Query: 133 LDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGI---IKPGCPVVI------GH 183
LD ++AV+ T+++ DH G T+ + K+ + + VI
Sbjct: 197 LDGL----RIAVAGFTNLTRDHLDYHG-TMQDYEEAKAALFSKLPGLGAAVINADDPAAA 251
Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKC---LVYQDKISQTNLTVLGLVGEH 240
++ + L +V D A + L D Q V L+G
Sbjct: 252 RLLAALPRGLKVGYSPQNAGADVQARDLRA-TAHGQVFTLATPDGSYQ---LVTRLLGRF 307
Query: 241 QYINAATAICAVQMAGFTLEKECIN-AALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299
N A++ G L + AA+ V GR++++ + P V +D
Sbjct: 308 NVSNLLLVAAALKKLGLPLAQIARALAAVSPVP--GRMERVGPTA-GAQGPL---VVVDY 361
Query: 300 GHNPNA 305
H P+A
Sbjct: 362 AHTPDA 367
>gnl|CDD|149357 pfam08245, Mur_ligase_M, Mur ligase middle domain.
Length = 188
Score = 38.4 bits (90), Expect = 0.003
Identities = 49/237 (20%), Positives = 74/237 (31%), Gaps = 62/237 (26%)
Query: 29 IGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDV 88
I GTNGK + LL +G
Sbjct: 1 ITGTNGKTTTTELIAALLSAAG-------------------------------------- 22
Query: 89 FRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDA-TNIIEKVAVSVI 147
V + N T + + L L + AD A++E+ G + + K ++VI
Sbjct: 23 ----GVVGTGGN-TNNAIGLPLLLALMERKGADYAVLELSSFGLGEGRLEGLAKPDIAVI 77
Query: 148 TSISLDHEKILGNTVSAIAKDKSGI---IKPGCPVVIGHQVYDEVREILVSKAEKMGCPY 204
T+IS DH G T+ A K+ I + VI D+ L + + G
Sbjct: 78 TNISPDHLDYHG-TMENYAAAKAEIFEGLPEDGIAVINA---DD--PELAKRLKNAGAKV 131
Query: 205 NVYG-DDFYAFEKNKCLVYQDKISQTNLTV--------LGLVGEHQYINAATAICAV 252
+G ++ V + TV L L G H NA A+ A
Sbjct: 132 ITFGLENEADDRAANIYVSSEGGKIVLFTVPGGELEISLPLPGRHNVYNALAALAAA 188
>gnl|CDD|179359 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 498
Score = 34.6 bits (80), Expect = 0.049
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55
P V+ I GTNGK + + + L E +G V V
Sbjct: 121 PKVLAITGTNGKTTTTALTGLLCERAGKKVAV 152
>gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Length = 433
Score = 33.9 bits (78), Expect = 0.089
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSV 53
PV+ I GTNGK + S LL+ +GL
Sbjct: 102 LPVVAITGTNGKTTTTSLLYHLLKAAGLKA 131
>gnl|CDD|162196 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase. A
close homolog, scoring just below the trusted cutoff, is
found (with introns) in Arabidopsis thaliana. Its role
is unknown.
Length = 464
Score = 32.7 bits (75), Expect = 0.20
Identities = 62/307 (20%), Positives = 97/307 (31%), Gaps = 59/307 (19%)
Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76
G P +L VI + GTNGK + S +LL G + G+ G
Sbjct: 79 GHPSKKLK-VIGVTGTNGKTTTTSLIAQLLRLLGK-----------------KTGLIGTI 120
Query: 77 G-RLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV---GLG-G 131
G RL + + + A T L++ + L + A A++EV L G
Sbjct: 121 GYRLGGNDLIKNP---------AALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQG 171
Query: 132 SLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVRE 191
+ +V T++S DH G T+ K+ + D+
Sbjct: 172 RVRGVR----FDAAVFTNLSRDHLDFHG-TMENYFAAKASLFTELGLKRFAVINLDDEYG 226
Query: 192 ILVSKAEKMGCPY---NVYGDDFYAFEKNKCLVYQDKISQTNLTVLG--------LVGEH 240
K D K Y + Q L+G
Sbjct: 227 AQFVKRLPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAGEGHLHTPLIGRF 286
Query: 241 QYINAATAICAV-QMAGFTLEKECINAALQSVQWF-GRLQKITEGPLLNKLPDHSEVWID 298
N A+ + + G LE I AAL+ + GR++ + G V +D
Sbjct: 287 NVYNLLAALATLLHLGGIDLED--IVAALEKFRGVPGRMELVDGGQKFL-------VIVD 337
Query: 299 GGHNPNA 305
H P+A
Sbjct: 338 YAHTPDA 344
>gnl|CDD|178894 PRK00139, murE,
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional.
Length = 460
Score = 32.0 bits (74), Expect = 0.27
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSG 50
G P D+L +I + GTNGK + A ++L G
Sbjct: 89 GHPSDKLK-LIGVTGTNGKTTTAYLLAQILRLLG 121
Score = 28.9 bits (66), Expect = 2.5
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWF-GRLQKITEGPLLNKLPDH 292
L+G N A+ A+ G LE AAL +Q GR++++ G
Sbjct: 272 SPLIGRFNVSNLLAALAALLALGVPLED--ALAALAKLQGVPGRMERVDAG-------QG 322
Query: 293 SEVWIDGGHNPNA 305
V +D H P+A
Sbjct: 323 PLVIVDYAHTPDA 335
>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions.
Length = 864
Score = 31.7 bits (72), Expect = 0.38
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 33/150 (22%)
Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVE 84
P++ + GTNGK + +L+ +G V + T+ G +
Sbjct: 480 PIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTT-----------------DGVYIGK-- 520
Query: 85 LLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAV 144
V+ N A+A + D A++E GG L ++ V
Sbjct: 521 --------YLVEKGDN-----TGPASARRILMDPTVDAAVLETARGGILREGLAFDRCDV 567
Query: 145 SVITSISLDHEKILG-NTVSAIAKDKSGII 173
V+T+I+ DH I NT+ +A K ++
Sbjct: 568 GVVTNIAGDHLGIGDINTIEDLADVKRVVV 597
>gnl|CDD|184501 PRK14093, PRK14093,
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase;
Provisional.
Length = 479
Score = 29.7 bits (67), Expect = 1.4
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 116 SKYPADC--AIIEVGLGGSLDATNIIEKVA--VSVITSISLDHEKILGNTVSAIAKDKSG 171
++ PAD A+ E+G+ + + +++ V V++IT++ H + + AIA K+
Sbjct: 154 ARCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSG-IEAIADAKAE 212
Query: 172 I---IKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNV-YGDDFYAFEKNKCLVYQDKIS 227
I ++PG V+ R L + A G V +G D A + + S
Sbjct: 213 IFTGLEPGGAAVLNRDNPQFDR--LAASARAAGIARIVSFGADEKADARLLDVALHADCS 270
Query: 228 QTNLTV--------LGLVGEHQYINAATAICAVQMAG 256
+ + LG+ G H +N+ + A ++AG
Sbjct: 271 AVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELAG 307
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 29.4 bits (66), Expect = 1.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55
PVI I G+NGK +V + + + +G+ V V
Sbjct: 109 PVIAITGSNGKSTVTDLTGVMAKAAGVKVAV 139
Score = 29.0 bits (65), Expect = 2.4
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 24/132 (18%)
Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFG-RLQKITEGPLLNKLPDH 292
L LVG H N + + AG K AL+S R Q + + +H
Sbjct: 263 LKLVGRHNVANVLVVLALLDAAGVDYRKAL--DALKSYTGLTHRCQVVAD--------NH 312
Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKG-SSNKPFYLVIGMVEGKKYGRYLEAFVELSPIV- 350
W++ N V+ ++ L G YL++G V GK F L P++
Sbjct: 313 GIKWVNDSKATN----VASTLAALSGLEIEGKLYLLVGGV-GKG-----ADFSPLKPVLA 362
Query: 351 -LSVSLICRGRE 361
L++ L C G +
Sbjct: 363 TLNLQLCCFGED 374
>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 29.0 bits (66), Expect = 2.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSV 53
P++ + GTNGK + +L+ SG V
Sbjct: 481 PIVAVTGTNGKTTTTRLIAHILKLSGKRV 509
>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 28.8 bits (65), Expect = 2.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55
P++ I G+NGK +V + + + +G V V
Sbjct: 106 PIVAITGSNGKSTVTTLVGEMAKAAGWKVGV 136
>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 445
Score = 28.3 bits (63), Expect = 3.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGL 51
VI I G+NGK +V S L GL
Sbjct: 111 KVIAITGSNGKTTVTSLVGYLCIKCGL 137
>gnl|CDD|183298 PRK11752, PRK11752, putative S-transferase; Provisional.
Length = 264
Score = 28.0 bits (63), Expect = 4.6
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 55 VHTSPHLIRWNERF--RLGVKGGRGRLVE 81
V + H+ RW + R VK RGR+V
Sbjct: 233 VGSYKHVQRWAKEIAERPAVK--RGRIVN 259
>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family.
This small subfamily includes diaminopropionate
ammonia-lyase from Salmonella typhimurium and a small
number of close homologs, about 50 % identical in
sequence. The enzyme is a pyridoxal phosphate-binding
homodimer homologous to threonine dehydratase (threonine
deaminase).
Length = 376
Score = 27.9 bits (62), Expect = 4.6
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 369 PKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEAL 421
P +MQ G+ +A EA+ ++R++ P ++L AG +AG L
Sbjct: 181 PTWIMQ-----GYATLA----DEAVEQLREMGSVTPTHVLLQAGVGSMAGGVL 224
>gnl|CDD|179428 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 447
Score = 27.5 bits (62), Expect = 6.0
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFG----RLQKITE 282
+ L G H NA AI A ++ G + E I L + F RLQ +
Sbjct: 269 IVLPGSHNLENALAAIAAAKLLG--VSNEAIREVLST---FSGVKHRLQYVGT 316
Score = 27.1 bits (61), Expect = 9.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55
P+I I G+NGK + + +L+ G +
Sbjct: 109 PIIGITGSNGKTTTTTLIGEMLKAGGQHALL 139
>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 448
Score = 27.6 bits (62), Expect = 6.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55
PVI I G+NGK +V + + + +G V V
Sbjct: 108 APVIAITGSNGKSTVTTLVGEMAKAAGKRVAV 139
>gnl|CDD|132195 TIGR03151, enACPred_II, putative enoyl-(acyl-carrier-protein)
reductase II. This oxidoreductase of the 2-nitropropane
dioxygenase family (pfam03060) is commonly found in
apparent operons with genes involved in fatty acid
biosynthesis. Furthermore, this genomic context
generally includes the fabG 3-oxoacyl-[ACP] reductase
and lacks the fabI enoyl-[ACP] reductase.
Length = 307
Score = 27.8 bits (62), Expect = 6.3
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 27/87 (31%)
Query: 297 IDGGHNPNAGLVVSKEISKLKGSSNKPF----YLVIGMVE-------------------- 332
I G+ P VV KEI K+K ++KPF L+ V+
Sbjct: 40 IGAGNAPPD--VVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGN 97
Query: 333 -GKKYGRYLEAFVELSPIVLSVSLICR 358
GK R E V++ P+V SV+L R
Sbjct: 98 PGKYIPRLKENGVKVIPVVASVALAKR 124
>gnl|CDD|180006 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 787
Score = 27.2 bits (61), Expect = 9.4
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPP 406
+ ++ K L+++ K+LG + + SS +E RK+ + L
Sbjct: 13 LGVSSKELLEKLKELGIEVKSHSSTVEE-EEARKLLDHLKKS 53
>gnl|CDD|184459 PRK14022, PRK14022,
UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase;
Provisional.
Length = 481
Score = 26.9 bits (60), Expect = 9.9
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSG 50
A SL+ M E PQ +L ++ GT GK + A F+ +L+
Sbjct: 94 AMSLIAM----EFYDNPQHKLK-LLAFTGTKGKTTAAYFAYHILKQLH 136
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,001,530
Number of extensions: 454533
Number of successful extensions: 941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 43
Length of query: 429
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 333
Effective length of database: 3,920,105
Effective search space: 1305394965
Effective search space used: 1305394965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)