RPSBLAST alignment of GI: 254780821 and protein with PDBid: 1p3d

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475
 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 50/283 (17%), Positives = 91/283 (32%), Gaps = 24/283 (8%)

Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203
           VSV+T++  DH          +       +        G  V      +L+    K+G  
Sbjct: 188 VSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFY--GLAVMCADDPVLMELVPKVGRQ 245

Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTVL---------GLVGEHQYINAATAICAVQM 254
              YG    A  + +            +             + G+H  +NA  A+   + 
Sbjct: 246 VITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKE 305

Query: 255 AGFTLEKECINAALQSVQW-FGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEI 313
            G   E   I  AL   Q    R  ++ E    N       +  D GH+P    V  K  
Sbjct: 306 EGIANEA--ILEALADFQGAGRRFDQLGEFIRPN---GKVRLVDDYGHHPTEVGVTIKAA 360

Query: 314 SKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSL--ICRGRERQSISITPKV 371
            +  G  +K   ++       +     + FV++   V ++ +  +    E   +    K 
Sbjct: 361 REGWG--DKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKS 418

Query: 372 LMQEAKKLGF-QAMACSSMIEALSRVRKINEELPPPLILIAGS 413
           L +  + LG    +  S   +    + +I +     LIL  G+
Sbjct: 419 LCRSIRNLGKVDPILVSDTSQLGDVLDQIIQ--DGDLILAQGA 459