RPSBLAST alignment of GI: 254780821 and protein with PDBid: 1p3d
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475
Score = 48.7 bits (115), Expect = 3e-06
Identities = 50/283 (17%), Positives = 91/283 (32%), Gaps = 24/283 (8%)
Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203
VSV+T++ DH + + G V +L+ K+G
Sbjct: 188 VSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFY--GLAVMCADDPVLMELVPKVGRQ 245
Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTVL---------GLVGEHQYINAATAICAVQM 254
YG A + + + + G+H +NA A+ +
Sbjct: 246 VITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKE 305
Query: 255 AGFTLEKECINAALQSVQW-FGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEI 313
G E I AL Q R ++ E N + D GH+P V K
Sbjct: 306 EGIANEA--ILEALADFQGAGRRFDQLGEFIRPN---GKVRLVDDYGHHPTEVGVTIKAA 360
Query: 314 SKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSL--ICRGRERQSISITPKV 371
+ G +K ++ + + FV++ V ++ + + E + K
Sbjct: 361 REGWG--DKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKS 418
Query: 372 LMQEAKKLGF-QAMACSSMIEALSRVRKINEELPPPLILIAGS 413
L + + LG + S + + +I + LIL G+
Sbjct: 419 LCRSIRNLGKVDPILVSDTSQLGDVLDQIIQ--DGDLILAQGA 459