RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] (429 letters) >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 Score = 215 bits (547), Expect = 2e-56 Identities = 128/434 (29%), Positives = 210/434 (48%), Gaps = 49/434 (11%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 ++ LL LG PQ + IH+ GTNGKGS A+ +LE SGL+V ++TSP ++R+ Sbjct: 21 DHRRILTLLHALGNPQQQGR-YIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRF 79 Query: 65 NERFRLGVKGGRGRLVEDVELLDV-------FRRVRRVKSAQNLTIFELSIATALVLFSK 117 NER + + D L++ R+++ ++ N+T FE A A F + Sbjct: 80 NERIMID-----HEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQ 134 Query: 118 YPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC 177 D A+IEVG+GG D+TN+I V VSV+T ++LDH+K+LG+T++AIAK K+GIIK G Sbjct: 135 RQVDVAVIEVGIGGDTDSTNVITPV-VSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGI 193 Query: 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFY-----AFEKNKCLVYQDKISQTNLT 232 PVV G+ + ++ +K G + + DF + Y+D+ + + Sbjct: 194 PVVTGNL-VPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDL 252 Query: 233 VLGLVGEHQYINAATAICAVQMAGFTLEKEC----INAALQSVQWFGRLQKITEGPLLNK 288 + LVG++Q N A AI ++ E I L + W RL+KI++ PL Sbjct: 253 EVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKISDTPL--- 309 Query: 289 LPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSP 348 + IDG HNP+ + + +L ++P ++ G++ K Y + L+ Sbjct: 310 ------IVIDGAHNPDGINGLITALKQLF---SQPITVIAGILADKDYAAMAD---RLTA 357 Query: 349 IVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLI 408 +V L+ +++ + + + S EAL ++P I Sbjct: 358 AFSTVYLVPVPGTPRALP-------EAGYEALHEGRLKDSWQEAL---AASLNDVPDQPI 407 Query: 409 LIAGSLYLAGEALR 422 +I GSLYLA + Sbjct: 408 VITGSLYLASAVRQ 421 >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 Score = 212 bits (540), Expect = 1e-55 Identities = 115/423 (27%), Positives = 183/423 (43%), Gaps = 32/423 (7%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 L ++ LL LG P IHIGGTNGKGSVA+ +L + G V + SPHL + Sbjct: 34 GLERISMLLSKLGNPHLEYK-TIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTF 92 Query: 65 NERFRL-GVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCA 123 ER RL +V+ E ++ + + + FE+ A A + F++ D A Sbjct: 93 RERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIA 152 Query: 124 IIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183 ++EVGLGG LDATN++ + I ++ DHEK LG T+ IA +KSGIIK P+V G Sbjct: 153 VLEVGLGGRLDATNVVFPLCS-TIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE 211 Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDFYA----FEKNKCLVYQDKISQTNLTVLGLVGE 239 + E +++ A K V DF + ++ + VL + G Sbjct: 212 R-KREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGP 270 Query: 240 HQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299 HQ NA A+ ++ G L ++ I L++ + GR + + + +DG Sbjct: 271 HQIENAGVALKTLEATGLPLSEKAIREGLKNAKNLGRFEILE--------KNGKMYILDG 322 Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359 HNP+ + + + + +P LVIG+++ K L + + I V + Sbjct: 323 AHNPHGAESLVRSLKLYF--NGEPLSLVIGILDDKNREDILR---KYTGIFERVIVTRVP 377 Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419 R L+ AKK +EA+ + ++ GSL+L G Sbjct: 378 SPR---MKDMNSLVDMAKKFFKNVEVIEDPLEAIESTERA--------TVVTGSLFLVGY 426 Query: 420 ALR 422 Sbjct: 427 VRE 429 >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* Length = 437 Score = 208 bits (531), Expect = 1e-54 Identities = 108/432 (25%), Positives = 180/432 (41%), Gaps = 46/432 (10%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 L ++ + E L + + + GTNGKG+ + +L +GL V V++SPHL+R+ Sbjct: 34 GLERVKQVAERLDLLKPAPK-IFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRY 92 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 ER R+ G+ + + E F ++ + +LT FE +AL LF + D I Sbjct: 93 TERVRIQ-----GQELSEAEHSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVI 147 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVGLGG LDATNI++ V+ ITSI+LDH LG +I ++K+G+ + G P V+G Sbjct: 148 LEVGLGGRLDATNIVDSD-VAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEP 206 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYI- 243 + A ++G + F + + Q+ + Q GE Q Sbjct: 207 DMPQSIAD---VAAELGAQLYRRDVAWK-FSQQEPFDQQEPVDQQINGWHWQCGERQLTG 262 Query: 244 ---------NAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSE 294 NAATA+ + + L E I LQ+ GR Q ++E P Sbjct: 263 LPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP---------L 313 Query: 295 VWIDGGHNPNAGLVVSKEISKLKGSSN----KPFYLVIGMVEGKKYGRYLEAFVELSPIV 350 + +D HNP+A + ++++ N V+GM+ K L LS V Sbjct: 314 LILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGMLSDKDIAGTLA---CLSERV 370 Query: 351 LSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 R + L + A S + A + + + ++++ Sbjct: 371 DEWYCAPLEGPR---GASAGQLAEHLVS----ARQFSDVETAWRQAMQDAD--TQDVVIV 421 Query: 411 AGSLYLAGEALR 422 GS + + Sbjct: 422 CGSFHTVAHVMA 433 >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 Score = 161 bits (407), Expect = 3e-40 Identities = 109/457 (23%), Positives = 176/457 (38%), Gaps = 55/457 (12%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ L++ LG PQ P IHI GTNGK SVA L+ TSPHL Sbjct: 46 SLTRISALMDLLGSPQRSYP-SIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSP 104 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRV-------------KSAQNLTIFELSIATA 111 ER + G+ + + + +R + + K ++ FE+ A A Sbjct: 105 VERISID-----GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMA 159 Query: 112 LVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSG 171 F+ P D A++EVG+GG DATN+I V+VIT IS+DH LG ++ IA +K+G Sbjct: 160 FAAFADAPVDVAVVEVGMGGRWDATNVINAP-VAVITPISIDHVDYLGADIAGIAGEKAG 218 Query: 172 IIKPGCPVVIG-----HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCL-----V 221 II + +V E+L++++ + +F + + Sbjct: 219 IITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQ 278 Query: 222 YQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKIT 281 Q + L L GEHQ NA A+ +V+ L +T Sbjct: 279 LQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAF----FGAGAQRQLDGDAVRAGFAAVT 334 Query: 282 EGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLE 341 L ++ V+ID HNP + + V+ ++ K L Sbjct: 335 SPGRLERMRSAPTVFIDAAHNPAGASA--LAQTLAHEFDFRFLVGVLSVLGDKDVDGILA 392 Query: 342 AFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGF--QAMACSSMIEALSRVRKI 399 A L P+ SV + G R ++ + L A + + ++ +A+ + Sbjct: 393 A---LEPVFDSVVVTHNGSPR---ALDVEALALAAGERFGPDRVRTAENLRDAIDVATSL 446 Query: 400 NEEL-----------PPPLILIAGSLYLAGEALRENG 425 ++ I+I GS+ AG A G Sbjct: 447 VDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFG 483 >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 Score = 139 bits (350), Expect = 1e-33 Identities = 102/418 (24%), Positives = 168/418 (40%), Gaps = 36/418 (8%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 L ++ + LG + P V + GTNGKG+ + +L +G V V++SPHL+R+ Sbjct: 31 GLERVSLVAARLGVLKPA-PFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRY 89 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 ER R+ + + + F + + +LT FE +AL LF + D I Sbjct: 90 TERVRVQGQE-----LPESAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVI 144 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVGLGG LDATNI++ V+V+TSI+LDH LG +I ++K+GI + P ++G Sbjct: 145 LEVGLGGRLDATNIVDAD-VAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEP 203 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 + + + V + + L N Sbjct: 204 EMPSTIADVAQEKGALLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLP------LVPQPN 257 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AATA+ A++ +G + + I + S GR Q ++E P V D HNP+ Sbjct: 258 AATALAALRASGLEVSENAIRDGIASAILPGRFQIVSESPR---------VIFDVAHNPH 308 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 A ++ + L N VIGM+ K L L +V R Sbjct: 309 AAEYLTGRMKALP--KNGRVLAVIGMLHDKDIAGTLA---WLKSVVDDWYCAPLEGPR-- 361 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALR 422 T + L++ + S+ +A + +L+ GS + + Sbjct: 362 -GATAEQLLEHLGN----GKSFDSVAQAWDAAMADAK--AEDTVLVCGSFHTVAHVME 412 >1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 Score = 123 bits (310), Expect = 6e-29 Identities = 64/425 (15%), Positives = 122/425 (28%), Gaps = 62/425 (14%) Query: 3 ADSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHL 61 + ++ L P D L ++ + GTNGK + + + G V + Sbjct: 87 SQLNERLSALAGRFYHEPSDNLR-LVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGN 145 Query: 62 IRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPAD 121 + +N T + + L A Sbjct: 146 GLLGKVI----------------------------PTENTTGSAVDVQHELAGLVDQGAT 177 Query: 122 CAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVI 181 +EV G + K A SV T++S DH G + K + Sbjct: 178 FCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHG-DMEHYEAAKWLLYSEHHCGQA 236 Query: 182 GHQVYDEVREILVSKAEKM-------GCPYNVYGDDFYA----FEKNKCLVYQDKISQTN 230 DEV ++K N +G A + + + Sbjct: 237 IINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDG 296 Query: 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLP 290 L+G N A+ + G+ L + + A + GR++ T P Sbjct: 297 EIESHLMGAFNVSNLLLALATLLALGYPLA-DLLKTAARLQPVCGRMEVFTA-------P 348 Query: 291 DHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIV 350 V +D H P+A + K + + + V G G + ++ Sbjct: 349 GKPTVVVDYAHTPDA---LEKALQAARLHCAGKLWCVFGCG-GDRDKGKRPLMGAIAEEF 404 Query: 351 LSVSLICRGRERQSISITPKVLMQEAKKLGF---QAMACSSMIEALSRVRKINEELPPPL 407 V+++ R + P+ ++ + A EA++ + + Sbjct: 405 ADVAVVTDDNPR---TEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAK--ENDV 459 Query: 408 ILIAG 412 +L+AG Sbjct: 460 VLVAG 464 >2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} Length = 535 Score = 88.5 bits (218), Expect = 3e-18 Identities = 63/410 (15%), Positives = 123/410 (30%), Gaps = 61/410 (14%) Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76 G P +RL VI I GT+GK + + L +G + + + Sbjct: 140 GHPSERLT-VIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSA----- 193 Query: 77 GRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDAT 136 T ++ L + D ++EV Sbjct: 194 -----------------------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR 230 Query: 137 NIIEKVAVSVITSISLDHEKILGNTVS---AIAKDKSGIIKPGCPVVIGHQVYDEVREIL 193 + AV T++S DH + A A + D R + Sbjct: 231 VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMA 290 Query: 194 VSKAEKMGCPYNVYGDDFYA------FEKNKCLVYQDKISQTNLTVLGLVGEHQYINAAT 247 A+ + + A + D + + L G + N Sbjct: 291 ARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLV 350 Query: 248 AICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGL 307 A+ + G + E+ L+ ++ GRL++I +D H P A Sbjct: 351 ALAILDTVGVSPEQ--AVPGLREIRVPGRLEQIDR-------GQGFLALVDYAHKPEALR 401 Query: 308 VVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAF---VELSPIVLSVSLICRGRERQS 364 V ++ ++ +V G + G+ +L+ +V+ R + + Sbjct: 402 SVLTTLA----HPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTA 457 Query: 365 ISITPKVLMQEAKKLGF--QAMACSSMIEALSRVRKINEELPPPLILIAG 412 I + ++ A ++G Q + + +A+ P ++LIAG Sbjct: 458 IR---REILAGAAEVGGDAQVVEIADRRDAIRHAVAWAR--PGDVVLIAG 502 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 69.6 bits (170), Expect = 1e-12 Identities = 81/480 (16%), Positives = 137/480 (28%), Gaps = 173/480 (36%) Query: 40 SFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED------VELLDVF---- 89 + S LE L V + + E+F + D EL+ F Sbjct: 10 TLSHGSLEHV-LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68 Query: 90 -RRVRRVKSAQNLTIFELSIATALVLF-SKYPADCAIIEVGLGG--------SLDATNII 139 V K Q + L + F + Y L G L N Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTE----FENCY----------LEGNDIHALAAKLLQENDT 114 Query: 140 EKVAVSVI-----TSISLDHEKILGNTVSAI----AKDKSGIIKPGCPVVIGHQ----VY 186 V + T+ + + SA+ + + ++ + G Q Y Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-----AIFGGQGNTDDY 169 Query: 187 -DEVREILVSKAEKMGCPYNVYG---DDFYAF--EKNKCLV----YQDKISQTNLTVLG- 235 +E+R++ Y Y D F E L+ +K+ L +L Sbjct: 170 FEELRDL-----------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218 Query: 236 LVGEHQ-----YINAATA------ICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGP 284 L Y+ + I +Q+A + + + L+ T G Sbjct: 219 LENPSNTPDKDYL--LSIPISCPLIGVIQLAHYVV--TAKLLGFTPGELRSYLKGAT-G- 272 Query: 285 LLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFV 344 HS+ GLV + I+ + + E+F Sbjct: 273 -------HSQ-----------GLVTAVAIA---ETDS------------------WESFF 293 Query: 345 ELSPIVLSVSL-I-CRGRE---RQSISITPKVLMQEAKKLGFQAMACSSM--IEALSR-- 395 ++V I R E S+ P +L +++ + S M I L++ Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLP--PSIL-EDSLENNEGVP--SPMLSISNLTQEQ 348 Query: 396 ----VRKINEELPP------PLI------LIAG---SLY-LAGEALRENGV-------RI 428 V K N LP L+ +++G SLY L LR+ RI Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL-TLRKAKAPSGLDQSRI 407 Score = 30.3 bits (68), Expect = 0.83 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 38/131 (29%) Query: 1 MAADSLLKM----GYLLEDLGRPQDRLPPVIHIGGTN------GKGSVA-SFSQRLLE-- 47 M+ +SL+++ G ++ + P+D L G +N G VA SFSQ L+ Sbjct: 1777 MSIESLVEVVFYRGMTMQ-VAVPRDEL------GRSNYGMIAINPGRVAASFSQEALQYV 1829 Query: 48 ------TSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNL 101 +G V + + +N + V G D+ LD V Q + Sbjct: 1830 VERVGKRTGWLVEI------VNYNVENQQYVAAG------DLRALDTVTNVLNFIKLQKI 1877 Query: 102 TIFELSIATAL 112 I EL + +L Sbjct: 1878 DIIELQKSLSL 1888 Score = 28.0 bits (62), Expect = 3.7 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%) Query: 25 PV---IHIGGTNGKGSVASFSQRLLET 48 PV IH GG GK ++S + ET Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFET 1695 >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 Score = 53.3 bits (127), Expect = 9e-08 Identities = 42/301 (13%), Positives = 103/301 (34%), Gaps = 32/301 (10%) Query: 114 LFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173 + + D ++E L + ++VIT++ H G+ +A + Sbjct: 155 VQAANDKDTLVME--LSSFQLMGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQN 212 Query: 174 KPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV 233 + + + + L + P++ A+ ++K L Y+ + + ++ Sbjct: 213 QMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGE-NIMSVDD 271 Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDH 292 +G+ G H NA I ++AG + + I L + RLQ + + Sbjct: 272 IGVPGSHNVENALATIAVAKLAGISNQV--IRETLSNFGGVKHRLQSLGK---------V 320 Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLS 352 + L K +S K + G+ G ++ + L +V+ Sbjct: 321 HGISFYNDSKSTNILATQKALSGFDN--TKVILIAGGLDRGNEFDELIPDITGLKHMVV- 377 Query: 353 VSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAG 412 + + + + A+K G + +A+ + ++ + +IL++ Sbjct: 378 ------------LGESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQ--QGDVILLSP 423 Query: 413 S 413 + Sbjct: 424 A 424 >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469 Score = 49.9 bits (118), Expect = 1e-06 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 17/284 (5%) Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203 +IT+ DH + GN+++ I + ++ DE+ L + Sbjct: 184 YLIITNARGDHLENYGNSLTRYRSAFEKISRNTD--LVVTFAEDELTSHLGDVTFGVKKG 241 Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKEC 263 + + K +V ++ L L + G H +NA I G+ L Sbjct: 242 TYTLEMRSASRAEQKAMVEKNGKRYLELK-LKVPGFHNVLNALAVIALFDSLGYDLAPVL 300 Query: 264 INAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKP 323 R P + V D H P+ + + ++ N+ Sbjct: 301 EALEEFRGVH-RRFSIAFHDP-----ETNIYVIDDYAHTPDEIRNLLQTAKEVFE--NEK 352 Query: 324 FYLVIGMVEGKKYGRYLEAFVE---LSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG 380 ++ + R F + L+ V+ + E+++ I+ K++ K LG Sbjct: 353 IVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNG-ISGKMIWDSLKSLG 411 Query: 381 FQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALREN 424 +A + E + + L + AG + + E Sbjct: 412 KEAYFVEKLPELEKVISVSENTV--FLFVGAGDIIYSSRRFVER 453 >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475 Score = 48.7 bits (115), Expect = 3e-06 Identities = 50/283 (17%), Positives = 91/283 (32%), Gaps = 24/283 (8%) Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203 VSV+T++ DH + + G V +L+ K+G Sbjct: 188 VSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFY--GLAVMCADDPVLMELVPKVGRQ 245 Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTVL---------GLVGEHQYINAATAICAVQM 254 YG A + + + + G+H +NA A+ + Sbjct: 246 VITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKE 305 Query: 255 AGFTLEKECINAALQSVQW-FGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEI 313 G E I AL Q R ++ E N + D GH+P V K Sbjct: 306 EGIANEA--ILEALADFQGAGRRFDQLGEFIRPN---GKVRLVDDYGHHPTEVGVTIKAA 360 Query: 314 SKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSL--ICRGRERQSISITPKV 371 + G +K ++ + + FV++ V ++ + + E + K Sbjct: 361 REGWG--DKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKS 418 Query: 372 LMQEAKKLGF-QAMACSSMIEALSRVRKINEELPPPLILIAGS 413 L + + LG + S + + +I + LIL G+ Sbjct: 419 LCRSIRNLGKVDPILVSDTSQLGDVLDQIIQ--DGDLILAQGA 459 >1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452 Score = 43.8 bits (102), Expect = 7e-05 Identities = 46/322 (14%), Positives = 100/322 (31%), Gaps = 41/322 (12%) Query: 121 DCAIIEVGL--GGSLDATNIIEKVAVSVITSISLDHEKILGNTVS-AIAKDKSGIIKPGC 177 D A+IE+G G + T + + +++ +++ H + G+ A AK + P Sbjct: 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212 Query: 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDF------YAFEKNKCLVYQDKISQTNL 231 + I + ++ + ++ + + + + Sbjct: 213 GIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVD 272 Query: 232 TVLGLVGEHQYINAATAICAVQMAGFTLEK-ECINAALQSVQWFGRLQKITEGPLLNKLP 290 +L L G H NA A G TL+ + A L++V ++ E Sbjct: 273 VLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQ------ 326 Query: 291 DHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIV 350 + D + + + + L +V M E V++ Sbjct: 327 ---LLLDDSYNANVGSMTAA--VQVLAEMPGYRVLVVGDMAEL--GAESEACHVQVGEAA 379 Query: 351 LSVS---LICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPL 407 + ++ G++ + ++R++ + E Sbjct: 380 KAAGIDRVLSVGKQ-----------SHAISTASGVGEHFADKTALITRLKLLIAEQQVIT 428 Query: 408 ILIAGS----LYLAGEALRENG 425 IL+ GS + AL+ENG Sbjct: 429 ILVKGSRSAAMEEVVRALQENG 450 >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439 Score = 37.8 bits (87), Expect = 0.005 Identities = 42/289 (14%), Positives = 81/289 (28%), Gaps = 36/289 (12%) Query: 114 LFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173 + + ++E L T + + I +++ DH + K I Sbjct: 145 MLLDDECELYVLE--LSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIY 202 Query: 174 KPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV 233 + V+ D + + E+ GD ++ + + N+ Sbjct: 203 ENAKVCVVNA--DDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKE 260 Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDH 292 + L G+H Y NA A+ AG AL + R + + E Sbjct: 261 MKLSGQHNYTNALAALALADAAGLPRAS--SLKALTTFTGLPHRFEVVLEH------NGV 312 Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLS 352 + N + L G ++ +GK L+ + Sbjct: 313 RWINDSKATNVGSTEAA------LNGLHVDGTLHLLLGGDGKSADFS-----PLARYLNG 361 Query: 353 --VSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKI 399 V L C GR+ + A A +M +A+ + Sbjct: 362 DNVRLYCFGRDGAQL----------AALRPEVAEQTETMEQAMRLLAPR 400 >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491 Score = 37.6 bits (86), Expect = 0.006 Identities = 43/286 (15%), Positives = 89/286 (31%), Gaps = 25/286 (8%) Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIK--PGCPVVIGHQVYDEVREILVSKAEK-- 199 V+++T+I DH + + + P + +RE+L + Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTT 248 Query: 200 ---MGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAG 256 +V +D+ + + L G H +NAA A+ G Sbjct: 249 TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEG 308 Query: 257 FTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSE---VWIDGGHNPNAGLVVSKEI 313 E I AL+S Q GR L + S + D GH+P + Sbjct: 309 IDD--EAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE-----VDA 361 Query: 314 SKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPI-----VLSVSLICRGRERQSISIT 368 + + P ++ + + ++ R + + + + + L + + E Sbjct: 362 TIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGAD 421 Query: 369 PKVLMQEAKKLGF-QAMACSSMIEALSRVRKINEELPPPLILIAGS 413 + L + + G + + + LIL+ G+ Sbjct: 422 SRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLT--GNDLILVQGA 465 >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524 Score = 34.5 bits (78), Expect = 0.047 Identities = 53/434 (12%), Positives = 110/434 (25%), Gaps = 76/434 (17%) Query: 14 EDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVK 73 + L + VI + GT+GK +L +G+ Sbjct: 112 QFLSEQVLQSRHVIAVAGTHGKXXXXXMLAWILHYAGIDAGFLI---------------- 155 Query: 74 GGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV----GL 129 GG + Q + +IE Sbjct: 156 GGVPLVNTT-----------DTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYDSA 204 Query: 130 GGSLDATNIIEKVAVSVITSISLDH---EKILGNTVSAIAKDKSGIIKPGCPVVIGHQVY 186 + + + +++ ++ DH L + I G ++ + Sbjct: 205 FFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQFHHMVRMIPSTGKIIMPAATIS 264 Query: 187 DE---------------VREILVSKAEKMGCPYNVYG----DDFYA----FEKNKCLVYQ 223 E V + +S + P D+ A + ++ V Sbjct: 265 LEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSF 324 Query: 224 DKISQTNLTV-LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITE 282 + + V + G H NA AI A G + K A R++ I + Sbjct: 325 NDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVS-VKTACAALSAFAGIKRRMELIGD 383 Query: 283 GPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEA 342 V+ D H+P A K + ++E + + Sbjct: 384 VN-------DILVFDDFAHHPTAITTTLDGAKKKLADRR-----LWAIIEPRSNTMKMGI 431 Query: 343 FVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGF---QAMACSSMIEALSRVRKI 399 + +++ E + K ++ A SS+ + + + Sbjct: 432 HQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIANPSIGSQQVLSSVDDIIKHICTH 491 Query: 400 NEELPPPLILIAGS 413 + I+I + Sbjct: 492 AK--AGDAIVIMSN 503 >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} Length = 326 Score = 33.5 bits (75), Expect = 0.089 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 6/130 (4%) Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203 +V+ ++ DH I + + + + +I + + + K Sbjct: 194 TAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVE 253 Query: 204 YNVYGDDFYAFEKNKC---LVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 + A E N V D + + L+G H +NA I A + G ++ Sbjct: 254 KFGTEHGWQAGEANADGSFDVLLDGKTAGRVK-WDLMGRHNRMNALAVIAAARHVGVDIQ 312 Query: 261 KECINAALQS 270 AL + Sbjct: 313 T--ACEALGA 320 >3meb_A Aspartate aminotransferase; pyridoxal phosphate, structural genomics, seattle structural genomics center for infectious disease; HET: PLP; 1.90A {Giardia lamblia atcc 50803} Length = 448 Score = 31.7 bits (71), Expect = 0.29 Identities = 4/35 (11%), Positives = 8/35 (22%) Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNK 218 +R +L + K P + Sbjct: 355 ARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAI 389 >1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.90.1.1 Length = 242 Score = 28.4 bits (62), Expect = 2.9 Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIG 182 + + +I+ + E I TV + K C ++ Sbjct: 195 LCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLY 233 >3da0_A Cleaved chimeric receptor binding protein from bacteriophages TP901-1 and P2; lactococcal phage P2; 1.65A {Lactococcus phage tp901-1} Length = 136 Score = 27.9 bits (62), Expect = 4.4 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 16/98 (16%) Query: 225 KISQTNLTVLGLVGEHQYINAATAICAVQM-AGFTLEKECINAALQSVQWFGRLQKITEG 283 K N+ V G + V+ G L+ N L V++FG + I +G Sbjct: 16 KTFTGNVEVNG------SLTLPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKG 69 Query: 284 PLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSN 321 + S W+D P V + G Sbjct: 70 WNM------SGTWVDRPFRPA---AVQSLVGHFAGRDT 98 >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* Length = 415 Score = 27.8 bits (61), Expect = 4.7 Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 72 VKGGRGRLVEDVELLDVFR 90 V+ G LVE V+L+D F Sbjct: 349 VRTIGGDLVEKVDLIDKFV 367 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 685 Score = 27.2 bits (60), Expect = 6.4 Identities = 14/71 (19%), Positives = 18/71 (25%), Gaps = 13/71 (18%) Query: 153 DHEKILGNTVSAIAKDKSGIIKPGCPVVIGH-----QVYDEVREILVSKAEKMG---CPY 204 D EK T I K P V G + +R+ + MG Sbjct: 33 DFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLR----MGFEEYIN 88 Query: 205 NVYGDDFYAFE 215 V D Sbjct: 89 PVI-VDERDIY 98 >1f0c_A ICE inhibitor; apoptosis, caspase inhibitor, protease inhibitor, serpin, viral protein; 2.26A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_A Length = 305 Score = 27.0 bits (59), Expect = 8.4 Identities = 8/31 (25%), Positives = 16/31 (51%) Query: 86 LDVFRRVRRVKSAQNLTIFELSIATALVLFS 116 +D+FR + +N+ I SI++ L + Sbjct: 1 MDIFREIASSMKGENVFISPPSISSVLTILY 31 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.137 0.395 Gapped Lambda K H 0.267 0.0473 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,680,256 Number of extensions: 172195 Number of successful extensions: 585 Number of sequences better than 10.0: 1 Number of HSP's gapped: 562 Number of HSP's successfully gapped: 25 Length of query: 429 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 334 Effective length of database: 3,390,050 Effective search space: 1132276700 Effective search space used: 1132276700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.7 bits)