HHsearch alignment for GI: 254780822 and conserved domain: TIGR01295
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative; InterPro: IPR005985 Class II bacteriocins are small are ribosomally-synthesized, non-lantibiotic peptide antibiotics produced by many bacteria . This entry represents a protein encoded within a number of operons responsible for class II bacteriocin production , , . It is generally the third protein in the operon and, together with the fourth protein, is responsible for transport to the extracellular environment . .
Probab=96.41 E-value=0.025 Score=34.54 Aligned_cols=89 Identities=16% Similarity=0.293 Sum_probs=62.8
Q ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---------HHHHHHH----CCCCCCEEEEEE
Q ss_conf 984899499998769970222134666654210001233322672326---------5777762----315688799997
Q gi|254780822|r 15 VLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEES---------SEISTRY----QISSIPTLILFK 81 (107)
Q Consensus 15 v~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~---------~~l~~~~----~v~~~Pt~~~~~ 81 (107)
T Consensus 19 ~~~~~e~~~~~~g~~~c~~c~~f~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~~~~ 98 (122)
T TIGR01295 19 ALDSGETFFLFIGFKTCPYCRKFSGTLSGFLAQSKFPIYYLDLENNGSFDLSSENELTDFKSFFGTPTGFLGTPTFVLLD 98 (122)
T ss_pred HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 53158636898504324002344345555431035633786437664311022445667766513422210167057740
Q ss_pred CCEEEEEEECCCCCHHHHHHHH
Q ss_conf 9989858874899989999999
Q gi|254780822|r 82 DGKVIDRMMPGASSQSDIIEWI 103 (107)
Q Consensus 82 ~g~~~~~~~~g~~~~~~l~~~i 103 (107)
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~ 120 (122)
T TIGR01295 99 DGKPVSGFCGGSTTLQELQDIT 120 (122)
T ss_pred CCEEEEEEECCCCCHHHHHHHH
T ss_conf 8805777617752367666541