HHsearch alignment for GI: 254780822 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.59 E-value=0.00061 Score=43.84 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=73.3
Q ss_pred EECHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECC
Q ss_conf 757677999998489-9499998769970222134666654210001233322672326577776231568879999799
Q gi|254780822|r 5 KVDTKSFDSEVLECS-NPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEESSEISTRYQISSIPTLILFKDG 83 (107)
Q Consensus 5 ~i~~~~f~~~v~~~~-~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 83 (107)
T Consensus 103 ~l~~~~~~~-I~~i~~~~~~~~~vSlsC~~CPdvVqAln~~A~~Np-~I~~~miDg~~f~~~~~~~~I~sVP~v~~--n~ 178 (515)
T TIGR03140 103 KLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NG 178 (515)
T ss_pred CCCHHHHHH-HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEEECHHCHHHHHHCCCCCCCEEEE--CC
T ss_conf 989999999-984799823899984688898799999999986099-85299997210777898648674772777--88
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8985887489998999999984
Q gi|254780822|r 84 KVIDRMMPGASSQSDIIEWILS 105 (107)
Q Consensus 84 ~~~~~~~~g~~~~~~l~~~i~~ 105 (107)
T Consensus 179 e~~---~~g~~~~~~~~~kl~~ 197 (515)
T TIGR03140 179 EEF---HNGRMDLAELLEKLEE 197 (515)
T ss_pred EEE---EECCCCHHHHHHHHHC
T ss_conf 387---2256139999999855