HHsearch alignment for GI: 254780822 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.31 E-value=0.0018 Score=41.19 Aligned_cols=92 Identities=15% Similarity=0.297 Sum_probs=72.3
Q ss_pred EECHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECC
Q ss_conf 7576779999984899-499998769970222134666654210001233322672326577776231568879999799
Q gi|254780822|r 5 KVDTKSFDSEVLECSN-PVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEESSEISTRYQISSIPTLILFKDG 83 (107)
Q Consensus 5 ~i~~~~f~~~v~~~~~-~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 83 (107)
T Consensus 462 ~~~~~~~~~-i~~~~~~~~~~~~vslsC~~CPdvV~a~~~~a~~np-~i~~~~id~~~f~~~~~~~~im~VP~~~~--n~ 537 (555)
T TIGR03143 462 PLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DD 537 (555)
T ss_pred CCCHHHHHH-HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEEEHHHCHHHHHHCCCCCCCEEEE--CC
T ss_conf 989899999-984589726999997678898699999999997399-95199986363888898639653776999--99
Q ss_pred EEEEEEECCCCCHHHHHHHH
Q ss_conf 89858874899989999999
Q gi|254780822|r 84 KVIDRMMPGASSQSDIIEWI 103 (107)
Q Consensus 84 ~~~~~~~~g~~~~~~l~~~i 103 (107)
T Consensus 538 ~~~---~~g~~~~~~il~~~ 554 (555)
T TIGR03143 538 QQV---YFGKKTIEEMLELI 554 (555)
T ss_pred EEC---CCCCCCHHHHHHHH
T ss_conf 351---03635599999850