HHsearch alignment for GI: 254780822 and conserved domain: cd02951
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.56 E-value=3.1e-14 Score=103.11 Aligned_cols=95 Identities=19% Similarity=0.440 Sum_probs=76.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH---HHHHHHCCCCCCCCCCCCCC-------------CHHHHHHHCCC
Q ss_conf 779999984899499998769970222134666---65421000123332267232-------------65777762315
Q gi|254780822|r 9 KSFDSEVLECSNPVVVDFWASWCRPCVKLSPII---DDIADELADKVKITKLDIEE-------------SSEISTRYQIS 72 (107)
Q Consensus 9 ~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~i~~~~vd~d~-------------~~~l~~~~~v~ 72 (107)
T Consensus 4 e~l~~A~~~~~Kpvlv~f~~~~C~~C~~m~~~~~~~~~v~~~l~~~f~~v~vd~~~~~~~~~f~g~~~~~~~la~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 99999986389849999978989708999998439999999996181478876156753003455644399999986987
Q ss_pred CCCEEEEEE-C-CEEEEEEECCCCCHHHHHHHHH
Q ss_conf 688799997-9-9898588748999899999998
Q gi|254780822|r 73 SIPTLILFK-D-GKVIDRMMPGASSQSDIIEWIL 104 (107)
Q Consensus 73 ~~Pt~~~~~-~-g~~~~~~~~g~~~~~~l~~~i~ 104 (107)
T Consensus 84 ~tPT~~fld~~gg~~i~~-~~Gy~~~~~f~~~L~ 116 (125)
T cd02951 84 FTPTVIFLDPEGGKEIAR-LPGYLPPDEFLAYLE 116 (125)
T ss_pred CCCEEEEECCCCCEEEEE-ECCCCCHHHHHHHHH
T ss_conf 677799986999867777-259789999999999