HHsearch alignment for GI: 254780822 and conserved domain: cd02953
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.74 E-value=6e-18 Score=124.53 Aligned_cols=94 Identities=21% Similarity=0.469 Sum_probs=77.7
Q ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH---HHHHHHCCCCCCCCCCCCCCC----HHHHHHHCCCCCCEEEEEEC
Q ss_conf 79999984899499998769970222134666---654210001233322672326----57777623156887999979
Q gi|254780822|r 10 SFDSEVLECSNPVVVDFWASWCRPCVKLSPII---DDIADELADKVKITKLDIEES----SEISTRYQISSIPTLILFKD 82 (107)
Q Consensus 10 ~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~i~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~~ 82 (107)
T Consensus 3 al~~-a~~~gKpVlvdf~A~WC~~Ck~m~~~~~~~~~v~~~~~~~~v~vkvD~t~~~~~~~~l~~~~~v~g~Pt~~f~~~ 81 (104)
T cd02953 3 ALAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHH-HHHCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 8999-998299199999867588888511420488999999724773576367789989999999839955677999879
Q ss_pred -CEEEEEEECCCCCHHHHHHHHH
Q ss_conf -9898588748999899999998
Q gi|254780822|r 83 -GKVIDRMMPGASSQSDIIEWIL 104 (107)
Q Consensus 83 -g~~~~~~~~g~~~~~~l~~~i~ 104 (107)
T Consensus 82 ~g~~~~~~l~G~~~~~~fl~~Le 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCEEECCCCHHHHHHHHC
T ss_conf 99867626123048999999759