HHsearch alignment for GI: 254780822 and conserved domain: cd02966
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.21 E-value=1.8e-11 Score=87.16 Aligned_cols=73 Identities=32% Similarity=0.761 Sum_probs=60.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CCCCCCCCCC-----------------------CCHHHHHHHCCCC
Q ss_conf 899499998769970222134666654210001-2333226723-----------------------2657777623156
Q gi|254780822|r 18 CSNPVVVDFWASWCRPCVKLSPIIDDIADELAD-KVKITKLDIE-----------------------ESSEISTRYQISS 73 (107)
Q Consensus 18 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~i~~~~vd~d-----------------------~~~~l~~~~~v~~ 73 (107)
T Consensus 18 ~gk~~vl~f~a~wC~~C~~~~~~l~~~~~~~~~~~v~vi~i~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCC
T ss_conf 99959999992789975453642023301344564138999788788899999887439833899869852899849980
Q ss_pred CCEEEEE-ECCEEEEEEE
Q ss_conf 8879999-7998985887
Q gi|254780822|r 74 IPTLILF-KDGKVIDRMM 90 (107)
Q Consensus 74 ~Pt~~~~-~~g~~~~~~~ 90 (107)
T Consensus 98 ~P~~~iid~~G~i~~~~~ 115 (116)
T cd02966 98 LPTTFLIDRDGRIRARHV 115 (116)
T ss_pred CCEEEEECCCCEEEEEEE
T ss_conf 457999999999999997