HHsearch alignment for GI: 254780822 and conserved domain: cd02999
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.92 E-value=6.3e-25 Score=164.71 Aligned_cols=99 Identities=16% Similarity=0.342 Sum_probs=88.0
Q ss_pred EEEECHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEC
Q ss_conf 17757677999998489949999876997022213466665421000123332267232657777623156887999979
Q gi|254780822|r 3 ALKVDTKSFDSEVLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEESSEISTRYQISSIPTLILFKD 82 (107)
Q Consensus 3 ~i~i~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 82 (107)
T Consensus 2 ~~~~v~~~~d~~v~n~~~~vlV~FYApWC~hCk~l~P~~~~la~~~~~~~~~a~~~~~~~~~l~~~ygV~g~PTi~lf~~ 81 (100)
T cd02999 2 PEEVLNIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNS 81 (100)
T ss_pred EEEHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEECC
T ss_conf 06548765889966689529999997888888987189999998789984899995457866787467543657999679
Q ss_pred CEEEEEEECCCCCHHHHHHHH
Q ss_conf 989858874899989999999
Q gi|254780822|r 83 GKVIDRMMPGASSQSDIIEWI 103 (107)
Q Consensus 83 g~~~~~~~~g~~~~~~l~~~i 103 (107)
T Consensus 82 g~~~--~Y~G~Rt~~~l~~F~ 100 (100)
T cd02999 82 TPRV--RYNGTRTLDSLAAFY 100 (100)
T ss_pred CCEE--CCCCCCCHHHHHHHC
T ss_conf 9660--478998989998549