HHsearch alignment for GI: 254780822 and conserved domain: cd03008
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.08 E-value=2.3e-10 Score=80.84 Aligned_cols=71 Identities=23% Similarity=0.447 Sum_probs=54.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC----------CCCCCCCCCCC---------CH--------------H
Q ss_conf 899499998769970222134666654210001----------23332267232---------65--------------7
Q gi|254780822|r 18 CSNPVVVDFWASWCRPCVKLSPIIDDIADELAD----------KVKITKLDIEE---------SS--------------E 64 (107)
Q Consensus 18 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~----------~i~~~~vd~d~---------~~--------------~ 64 (107)
T Consensus 24 ~GKvVgLYFSA~WCpPCr~FTP~L~~fY~~l~~~~~~~~~~~fEIVfVS~Drse~~f~~y~~~MP~~WlAlPf~d~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHH
T ss_conf 89999999747868148767789999999998765440378779999836899999999999779872665769689999
Q ss_pred HHHHHCCCCCCEEEEEE-CCEEEEE
Q ss_conf 77762315688799997-9989858
Q gi|254780822|r 65 ISTRYQISSIPTLILFK-DGKVIDR 88 (107)
Q Consensus 65 l~~~~~v~~~Pt~~~~~-~g~~~~~ 88 (107)
T Consensus 104 L~~~f~V~gIPtLVil~~dG~vit~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHCCCCCCCEEEEECCCCCEECH
T ss_conf 9998599878889999899989737