HHsearch alignment for GI: 254780822 and conserved domain: cd03023
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.58 E-value=2.3e-07 Score=63.61 Aligned_cols=80 Identities=24% Similarity=0.490 Sum_probs=60.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------------------------------------
Q ss_conf 899499998769970222134666654210001233322672--------------------------------------
Q gi|254780822|r 18 CSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDI-------------------------------------- 59 (107)
Q Consensus 18 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~-------------------------------------- 59 (107)
T Consensus 4 ~A~v~ivef~d~~Cp~C~~~~~~l~~~~~~~~~-v~~~~~~~P~~~~~~~~aa~~~~~~~~~~~~~f~~~~~~l~~~~~~ 82 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD-VRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMATRGR 82 (154)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC
T ss_conf 999999998899986378888999999985887-0488550642564639999999999986812599999999983642
Q ss_pred ---------------------------------CCCHHHHHHHCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHHH
Q ss_conf ---------------------------------326577776231568879999799898588748999899999998
Q gi|254780822|r 60 ---------------------------------EESSEISTRYQISSIPTLILFKDGKVIDRMMPGASSQSDIIEWIL 104 (107)
Q Consensus 60 ---------------------------------d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~ 104 (107)
T Consensus 83 ~~~~~l~~~a~~~gld~~~f~~~~~s~~~~~~v~~~~~~a~~~gI~gTPt~~I--ng~~----~~G~~~~~~l~~~ie 154 (154)
T cd03023 83 LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFII--GDTV----IPGAVPADTLKEAID 154 (154)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEE--CCEE----ECCCCCHHHHHHHHC
T ss_conf 03899999999839988999988658889999999899999859978998989--9999----438899999999759