HHsearch alignment for GI: 254780822 and conserved domain: cd03026
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.85 E-value=9.8e-05 Score=48.41 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=64.9
Q ss_pred HHHCCC-CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCEEEEEEECCC
Q ss_conf 984899-4999987699702221346666542100012333226723265777762315688799997998985887489
Q gi|254780822|r 15 VLECSN-PVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEESSEISTRYQISSIPTLILFKDGKVIDRMMPGA 93 (107)
Q Consensus 15 v~~~~~-~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~ 93 (107)
T Consensus 7 i~~i~~~~~i~vfVSlsC~~CP~vV~a~~~~A~~Np-~I~~~~iD~~~f~d~~~~~~ImsVP~vvi--N~e~~---~~G~ 80 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELF---GFGR 80 (89)
T ss_pred HHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEEEEHHHCHHHHHHCCCCCCCEEEE--CCEEE---EECC
T ss_conf 985699768999982899997899999999998699-81699998064788999759644897999--99677---4065
Q ss_pred CCHHHHHH
Q ss_conf 99899999
Q gi|254780822|r 94 SSQSDIIE 101 (107)
Q Consensus 94 ~~~~~l~~ 101 (107)
T Consensus 81 ~~~~ell~ 88 (89)
T cd03026 81 MTLEEILA 88 (89)
T ss_pred CCHHHHHC
T ss_conf 15998942