HHsearch alignment for GI: 254780822 and conserved domain: pfam07449

>pfam07449 HyaE Hydrogenase-1 expression protein HyaE. This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the E. coli protein HyaE, and the homologous proteins HoxO of R. eutropha and HupG of R. leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly.
Probab=96.01  E-value=0.03  Score=34.08  Aligned_cols=88  Identities=15%  Similarity=0.379  Sum_probs=59.0

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEECC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECC
Q ss_conf             576779999984899499998769--970222134666654210001233322672326577776231568879999799
Q gi|254780822|r    6 VDTKSFDSEVLECSNPVVVDFWAS--WCRPCVKLSPIIDDIADELADKVKITKLDIEESSEISTRYQISSIPTLILFKDG   83 (107)
Q Consensus         6 i~~~~f~~~v~~~~~~vlv~f~a~--wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g   83 (107)
T Consensus        14 vd~~~ld~~-~~~~g~~vLfl~gDp~R~pE~~DvAVVLPEL~~aF~~~~~~avv~~~~E~al~~rfgv~~~PaLvf~r~g   92 (107)
T pfam07449        14 VDADTLDDW-LAAPGDGVLLLAGDPNRFPEVLDVAVVLPELLRAFPQRFRGAVVAREQEEALAARFGVRRFPSLLFFRDG   92 (107)
T ss_pred             ECHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             041227889-7388958999179977587634410371999998644031225686789999998597547648999899


Q ss_pred             EEEEEEECCCCC
Q ss_conf             898588748999
Q gi|254780822|r   84 KVIDRMMPGASS   95 (107)
Q Consensus        84 ~~~~~~~~g~~~   95 (107)
T Consensus        93 ~~lG~-i~~i~d  103 (107)
T pfam07449        93 RYLGV-LAGIRD  103 (107)
T ss_pred             EEEEE-ECCCCC
T ss_conf             68774-535446