HHsearch alignment for GI: 254780822 and conserved domain: pfam07449
>pfam07449 HyaE Hydrogenase-1 expression protein HyaE. This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the E. coli protein HyaE, and the homologous proteins HoxO of R. eutropha and HupG of R. leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly.
Probab=96.01 E-value=0.03 Score=34.08 Aligned_cols=88 Identities=15% Similarity=0.379 Sum_probs=59.0
Q ss_pred ECHHHHHHHHHHCCCCEEEEEECC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECC
Q ss_conf 576779999984899499998769--970222134666654210001233322672326577776231568879999799
Q gi|254780822|r 6 VDTKSFDSEVLECSNPVVVDFWAS--WCRPCVKLSPIIDDIADELADKVKITKLDIEESSEISTRYQISSIPTLILFKDG 83 (107)
Q Consensus 6 i~~~~f~~~v~~~~~~vlv~f~a~--wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 83 (107)
T Consensus 14 vd~~~ld~~-~~~~g~~vLfl~gDp~R~pE~~DvAVVLPEL~~aF~~~~~~avv~~~~E~al~~rfgv~~~PaLvf~r~g 92 (107)
T pfam07449 14 VDADTLDDW-LAAPGDGVLLLAGDPNRFPEVLDVAVVLPELLRAFPQRFRGAVVAREQEEALAARFGVRRFPSLLFFRDG 92 (107)
T ss_pred ECHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 041227889-7388958999179977587634410371999998644031225686789999998597547648999899
Q ss_pred EEEEEEECCCCC
Q ss_conf 898588748999
Q gi|254780822|r 84 KVIDRMMPGASS 95 (107)
Q Consensus 84 ~~~~~~~~g~~~ 95 (107)
T Consensus 93 ~~lG~-i~~i~d 103 (107)
T pfam07449 93 RYLGV-LAGIRD 103 (107)
T ss_pred EEEEE-ECCCCC
T ss_conf 68774-535446