HHsearch alignment for GI: 254780823 and conserved domain: COG1330

>COG1330 RecC Exonuclease V gamma subunit [DNA replication, recombination, and repair].
Probab=100.00  E-value=5.2e-30  Score=213.27  Aligned_cols=870  Identities=13%  Similarity=0.119  Sum_probs=434.2

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHCCCCC-CCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHH
Q ss_conf             9838988937999999971121011236-789813322206762796899999999985118886514033125776565
Q gi|254780823|r    9 FTIAPSSPFFREMIPALLNGTLVENFRY-DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE   87 (1040)
Q Consensus         9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~-~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~   87 (1040)
T Consensus         2 f~iyhSN~-ld~l~~ll~~--l~e~~p~~~pf~~e-----~ILV~s~gm~qWL~~~LA~~~GiaaNl~--F~~pa~Fiw~   71 (1078)
T COG1330           2 FTLYHSNR-LDVLKALLLA--LAEDEPLDDPFEKE-----LILVQSPGMAQWLQMTLAKVLGIAANLK--FPLPASFIWQ   71 (1078)
T ss_pred             CEEEECCH-HHHHHHHHHH--HHHCCCCCCCCCCC-----EEEECCCCHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHH
T ss_conf             64674232-5568999999--97446667877541-----6997680099999999998748553320--5761568999


Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             54045433467788888189999999999999863100000012232111356978899989999999999997599978
Q gi|254780823|r   88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE  167 (1040)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~  167 (1040)
T Consensus        72 ~~~~~lp~i~~~-s~f~~~~m~W~lm~llp~ll~~~~f~~l----~~yl~D~~~~~~~yqla~klAdlFdqY~vyRp~wi  146 (1078)
T COG1330          72 LFDAVLPEIPEE-SAFDKESMSWRLMALLPLLLENIEFTEL----RNYLKDDSDSRKRYQLASKLADLFDQYLVYRPDWI  146 (1078)
T ss_pred             HHHHHCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCHHHHHH----HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf             999764576434-6665101332699986988605556889----98862231144778999999999998888282788


Q ss_pred             HHHHCC---HHCCHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHH-HHCCCCCEEEEEECCCCCH
Q ss_conf             987400---22020799999999999999999975324---8889899999999874434-4227688099983456616
Q gi|254780823|r  168 DLHALK---NEKYGMWWLLAADFLKIASKYWTERLVEL---NASSPVGYQIALMRAEAEH-LMKGTKGPIIIAGSTGSIP  240 (1040)
Q Consensus       168 ~L~~l~---~~~~~~~w~~~~~fL~~~~~~~~~~l~~~---g~~d~~~~~~~~~~~~~~~-~~~~~~~~i~v~g~~~~~~  240 (1040)
T Consensus       147 ~~We~g~~~~~~~n~~wQ~~L---------Wr~L~~~~~~~~~~h~a~l~~~f~~~l~~~~~p~~lP~RlfIfG~s~Lp~  217 (1078)
T COG1330         147 AAWEDGLFLGLGDNEKWQAEL---------WRALVADTTELSQPHRANLHKRFIEILDSKKCPQELPKRLFIFGISALPP  217 (1078)
T ss_pred             HHHCCCCCCCCCCCCCHHHHH---------HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCH
T ss_conf             874346544567664427999---------99999765420363154899999998525678878996699936665798


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH--HHHHHCCCCCCCCCCCCCHHHHH--HHHHHHCCCCHHHCCCCCCC
Q ss_conf             799999998614896899824863210788864--33420123333344467636899--99997629996660257766
Q gi|254780823|r  241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT--ITEKSTNITSSNTTYSTHPQYSL--AKLLDFLDIKREDVKRLGNV  316 (1040)
Q Consensus       241 ~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~  316 (1040)
T Consensus       218 ~yl~~l~als~~~dVhl~~~nPc~~Ywgdl~~~~~~~~l~-~r~~~-~p~~~~~~~~~~~~pLLaswGk~grd~~~~l~~  295 (1078)
T COG1330         218 HYLQALQALSKHFDVHLLFFNPCREYWGDLIDDRALARLL-PRQRR-GPDTDNAEQYVLQNPLLASWGKLGRDFYYLLLD  295 (1078)
T ss_pred             HHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCHHHHHHHH-HCCCC-CCCCHHHHHHHHCCHHHHHHHHHCHHHHHHHHH
T ss_conf             9999999977423069994681798988752628888873-12666-876137888642045999867536789999984


Q ss_pred             CCCCHHHHHHH---HHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC----CCEE
Q ss_conf             64536777754---4420111221000000123567653213378159955998999999999999986422----9849
Q gi|254780823|r  317 SNEMYGRSMVI---SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKS  389 (1040)
Q Consensus       317 ~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~----~~~~  389 (1040)
T Consensus       296 ~e~~~~~~~F~~~~~dsLL~~iQ~dIl~l~~~~~~~~~ls~~D~Si~ih~chs~~REVevL~d~Ll~ll~~dp~L~PrdI  375 (1078)
T COG1330         296 LEIEQEIDAFKEIEPDSLLHQIQADILHLEPFSRSGRSLSTSDRSIQIHVCHSPKREVEVLHDKLLALLEEDPTLQPRDI  375 (1078)
T ss_pred             CCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             43210255405678733599999998735778866688766898279985288316799999999999635989996137


Q ss_pred             EEEECCCCHHHHHHHHHHHH-----CCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CCCCCHH
Q ss_conf             99802641135788843551-----3777665690035288989999999998379997899998629654--5667938
Q gi|254780823|r  390 ALITADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEK  462 (1040)
Q Consensus       390 avv~~d~~~~~~v~~~L~~~-----gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~--~~~~~~~  462 (1040)
T Consensus       376 vVm~~dId~Y~P~I~AvFg~~~~~~~lP~~lsD~~~~~~~pll~~~~~Ll~l~~Srf~~~eiL~LL~~p~l~~rF~i~e~  455 (1078)
T COG1330         376 VVLVPDIDSYTPYIEAVFGQAPIERHLPYSLSDRSLSQTEPLLNAFLLLLDLPESRFSAEEVLDLLDVPPLAARFGITEE  455 (1078)
T ss_pred             EEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHCCCCHH
T ss_conf             99836456616999999488876662653623543320027999999985163012769999998307777855288820


Q ss_pred             HHHHHHHHHHHHHHCCCC----------CCCC----CCCHHHHHHHHCCCCCCC-CCCCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf             999999973223210455----------7778----111788875220114444-3455201015534325799999998
Q gi|254780823|r  463 YLSRAKNALELVALRGNK----------NSYD----IMDLKSLVLDRIATQKNN-THVPHWQSRLSEEDKELAVLLVDHI  527 (1040)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~----------~~~~----~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l  527 (1040)
T Consensus       456 ~L~~l~~wv~~~girWGld~~~~~~l~~pa~~~ntW~~Gl~RmLlgyam~e~~~~wqg~l~~~~v~g~~~El~g----~L  531 (1078)
T COG1330         456 ELLTLRHWVEESGIRWGLDSTHRRELGLPATGQNTWRFGLERMLLGYAMDEDAGEWQGVLPYDEVGGLRAELAG----KL  531 (1078)
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHH----HH
T ss_conf             68999999985287236574444331688300336999999998604455520122256765610012899999----99


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf             99999987501100221023788999999999997236763211145665777999999998664213766447788999
Q gi|254780823|r  528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID  607 (1040)
Q Consensus       528 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  607 (1040)
T Consensus       532 a~fl~~L---~~~~~~l~q~~~~~~W~~~l~~Ll~~ff~~~~~~~~~l~~--i~~~~~~~~~~~~~a~~~~~l~~~~l~~  606 (1078)
T COG1330         532 AHFLERL---SAWYRGLSQPAYLEEWREILSDLLDDFFLSDTDEEAALTI--LEFKWVPFIADSLSANYLKELPLDVLRD  606 (1078)
T ss_pred             HHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             9999999---9999986477849999999999999981689506789999--9998889998655523342158999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-HHHHHHHHHH
Q ss_conf             999862244335667787737980343335665863785286311345666667648967885648999-6678889999
Q gi|254780823|r  608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-AEKYIGQAAH  686 (1040)
Q Consensus       608 ~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~-~e~~~~~~~~  686 (1040)
T Consensus       607 ~~~~~l~~~~~~~~f-l~G~vnfctl~PmrsiPfkvVCllGmndg~~Pr~~~~~~f---dLm~~~~~~gDrsrrddDryL  682 (1078)
T COG1330         607 ILAALLLDESISQRF-LAGSVNFCTLVPMRSIPFKVVCLLGMNDGDFPRQNSPDGF---DLMAKDPRKGDRSRRDDDRYL  682 (1078)
T ss_pred             HHHHHCCCCCCCCCE-EEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCH---HHHHHCCCCCCCCCCCHHHHH
T ss_conf             998741478866650-1023204543003676747788704767888865687632---566535344542243048999


Q ss_pred             HHHHHHCCC-EEEEEEECCC--CCCCCCCCHHHHHHHHCCCC-----CC----HHHCCC-------------CC---CCH
Q ss_conf             999985598-5999920467--77665665378887731473-----10----000113-------------65---322
Q gi|254780823|r  687 DFEMANGTR-HLIYTRSLRE--NNIPTIASRWLQRLLVLGGT-----DF----FDNLKK-------------RG---QCY  738 (1040)
Q Consensus       687 ~~~~~~~a~-~v~lt~~~~~--~~~~~~ps~~l~~l~~~~~~-----~~----~~~~~~-------------~~---~~~  738 (1040)
T Consensus       683 FLeaLisA~~~lyISYiGrsi~d~~~r~PSvll~eLld~i~~~~~~~g~~~~~~~~l~~~H~~q~Fs~~~f~~~~~~sfa  762 (1078)
T COG1330         683 FLEALISAQEQLYISYIGRSIRDNSERPPSVLLNELLDYIDQSYSLPGDEYRIAKHLLELHPLQPFSPRNFQAGELQSFA  762 (1078)
T ss_pred             HHHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCC
T ss_conf             99999975564578884255566887898188999999877761688647899876774089866787773764101358


Q ss_pred             HHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC---HHHHHHHHH
Q ss_conf             3478752101234--34547556763001246778004577642836888976328888872124899---889989999
Q gi|254780823|r  739 LDWTRKLDYTTKQ--PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD---RTDRGTLFH  813 (1040)
Q Consensus       739 ~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~---a~~~GtlvH  813 (1040)
T Consensus       763 ~~~l~~a~~~~~~~~~~~~f~~p~-~~~~~~~el~L~~L~~F~~~Pv~~Ffq~~L~v~~~~~~~~~~d~e~f~~d~L~~~  841 (1078)
T COG1330         763 PEWLPAAKQLQGKRLSPAEFIQPL-LPLEPPAELNLDELIRFWSHPVKHFFQQRLGVKFPDQDEEIEDSEPFELDGLSRY  841 (1078)
T ss_pred             HHHHHHHHHHHCCCCCCHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHH
T ss_conf             777788898616888954534676-6689920057999999997789999998248878844443277565444540032


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
Q ss_conf             9999998612589834789999999999965327986699999----999999999999999732468859999965688
Q gi|254780823|r  814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW----RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM  889 (1040)
Q Consensus       814 ~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~  889 (1040)
T Consensus       842 ~i~~~l~~~-l~~-~d~a~~~~~~----~~~g~LP~~~fg~~~~~~~~~~~~~la~~v~-~~~~~~--~~~--~~i--~~  908 (1078)
T COG1330         842 QINERLLEG-LDE-QDDAERQLRR----RLQGDLPYGEFGVIFADQIREEAKPLANAVL-YSIEQP--GQS--VEI--DL  908 (1078)
T ss_pred             HHHHHHHHH-HHH-HHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHCC--CCC--EEE--EC
T ss_conf             289999976-531-1257899998----7427999770689999999887899999999-875478--975--654--02


Q ss_pred             EECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf             9788237999999788887998589997268534688798423012169999999
Q gi|254780823|r  890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL  944 (1040)
Q Consensus       890 ~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~  944 (1040)
T Consensus       909 ~i~--gv~l~G~l~~~~--~~g~---~r~~~~~~~~~~~l------~~wle~li~  950 (1078)
T COG1330         909 TIH--GVRLKGWLLQLY--GDGL---VRWRYGKPNDKQLL------ALWLEHLIY  950 (1078)
T ss_pred             CCC--CEEEEEEHHHHC--CCCC---EEEECCCCCCHHHH------HHHHHHHHH
T ss_conf             107--478875314334--7981---46405788707799------999999999