HHsearch alignment for GI: 254780823 and conserved domain: COG1330
>COG1330 RecC Exonuclease V gamma subunit [DNA replication, recombination, and repair].
Probab=100.00 E-value=5.2e-30 Score=213.27 Aligned_cols=870 Identities=13% Similarity=0.119 Sum_probs=434.2
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCC-CCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHH
Q ss_conf 9838988937999999971121011236-789813322206762796899999999985118886514033125776565
Q gi|254780823|r 9 FTIAPSSPFFREMIPALLNGTLVENFRY-DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 (1040)
Q Consensus 9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~-~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~ 87 (1040)
T Consensus 2 f~iyhSN~-ld~l~~ll~~--l~e~~p~~~pf~~e-----~ILV~s~gm~qWL~~~LA~~~GiaaNl~--F~~pa~Fiw~ 71 (1078)
T COG1330 2 FTLYHSNR-LDVLKALLLA--LAEDEPLDDPFEKE-----LILVQSPGMAQWLQMTLAKVLGIAANLK--FPLPASFIWQ 71 (1078)
T ss_pred CEEEECCH-HHHHHHHHHH--HHHCCCCCCCCCCC-----EEEECCCCHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHH
T ss_conf 64674232-5568999999--97446667877541-----6997680099999999998748553320--5761568999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 54045433467788888189999999999999863100000012232111356978899989999999999997599978
Q gi|254780823|r 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 (1040)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~ 167 (1040)
T Consensus 72 ~~~~~lp~i~~~-s~f~~~~m~W~lm~llp~ll~~~~f~~l----~~yl~D~~~~~~~yqla~klAdlFdqY~vyRp~wi 146 (1078)
T COG1330 72 LFDAVLPEIPEE-SAFDKESMSWRLMALLPLLLENIEFTEL----RNYLKDDSDSRKRYQLASKLADLFDQYLVYRPDWI 146 (1078)
T ss_pred HHHHHCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCHHHHHH----HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 999764576434-6665101332699986988605556889----98862231144778999999999998888282788
Q ss_pred HHHHCC---HHCCHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHH-HHCCCCCEEEEEECCCCCH
Q ss_conf 987400---22020799999999999999999975324---8889899999999874434-4227688099983456616
Q gi|254780823|r 168 DLHALK---NEKYGMWWLLAADFLKIASKYWTERLVEL---NASSPVGYQIALMRAEAEH-LMKGTKGPIIIAGSTGSIP 240 (1040)
Q Consensus 168 ~L~~l~---~~~~~~~w~~~~~fL~~~~~~~~~~l~~~---g~~d~~~~~~~~~~~~~~~-~~~~~~~~i~v~g~~~~~~ 240 (1040)
T Consensus 147 ~~We~g~~~~~~~n~~wQ~~L---------Wr~L~~~~~~~~~~h~a~l~~~f~~~l~~~~~p~~lP~RlfIfG~s~Lp~ 217 (1078)
T COG1330 147 AAWEDGLFLGLGDNEKWQAEL---------WRALVADTTELSQPHRANLHKRFIEILDSKKCPQELPKRLFIFGISALPP 217 (1078)
T ss_pred HHHCCCCCCCCCCCCCHHHHH---------HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCH
T ss_conf 874346544567664427999---------99999765420363154899999998525678878996699936665798
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH--HHHHHCCCCCCCCCCCCCHHHHH--HHHHHHCCCCHHHCCCCCCC
Q ss_conf 799999998614896899824863210788864--33420123333344467636899--99997629996660257766
Q gi|254780823|r 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT--ITEKSTNITSSNTTYSTHPQYSL--AKLLDFLDIKREDVKRLGNV 316 (1040)
Q Consensus 241 ~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~ 316 (1040)
T Consensus 218 ~yl~~l~als~~~dVhl~~~nPc~~Ywgdl~~~~~~~~l~-~r~~~-~p~~~~~~~~~~~~pLLaswGk~grd~~~~l~~ 295 (1078)
T COG1330 218 HYLQALQALSKHFDVHLLFFNPCREYWGDLIDDRALARLL-PRQRR-GPDTDNAEQYVLQNPLLASWGKLGRDFYYLLLD 295 (1078)
T ss_pred HHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCHHHHHHHH-HCCCC-CCCCHHHHHHHHCCHHHHHHHHHCHHHHHHHHH
T ss_conf 9999999977423069994681798988752628888873-12666-876137888642045999867536789999984
Q ss_pred CCCCHHHHHHH---HHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC----CCEE
Q ss_conf 64536777754---4420111221000000123567653213378159955998999999999999986422----9849
Q gi|254780823|r 317 SNEMYGRSMVI---SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKS 389 (1040)
Q Consensus 317 ~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~----~~~~ 389 (1040)
T Consensus 296 ~e~~~~~~~F~~~~~dsLL~~iQ~dIl~l~~~~~~~~~ls~~D~Si~ih~chs~~REVevL~d~Ll~ll~~dp~L~PrdI 375 (1078)
T COG1330 296 LEIEQEIDAFKEIEPDSLLHQIQADILHLEPFSRSGRSLSTSDRSIQIHVCHSPKREVEVLHDKLLALLEEDPTLQPRDI 375 (1078)
T ss_pred CCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 43210255405678733599999998735778866688766898279985288316799999999999635989996137
Q ss_pred EEEECCCCHHHHHHHHHHHH-----CCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CCCCCHH
Q ss_conf 99802641135788843551-----3777665690035288989999999998379997899998629654--5667938
Q gi|254780823|r 390 ALITADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEK 462 (1040)
Q Consensus 390 avv~~d~~~~~~v~~~L~~~-----gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~--~~~~~~~ 462 (1040)
T Consensus 376 vVm~~dId~Y~P~I~AvFg~~~~~~~lP~~lsD~~~~~~~pll~~~~~Ll~l~~Srf~~~eiL~LL~~p~l~~rF~i~e~ 455 (1078)
T COG1330 376 VVLVPDIDSYTPYIEAVFGQAPIERHLPYSLSDRSLSQTEPLLNAFLLLLDLPESRFSAEEVLDLLDVPPLAARFGITEE 455 (1078)
T ss_pred EEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHCCCCHH
T ss_conf 99836456616999999488876662653623543320027999999985163012769999998307777855288820
Q ss_pred HHHHHHHHHHHHHHCCCC----------CCCC----CCCHHHHHHHHCCCCCCC-CCCCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf 999999973223210455----------7778----111788875220114444-3455201015534325799999998
Q gi|254780823|r 463 YLSRAKNALELVALRGNK----------NSYD----IMDLKSLVLDRIATQKNN-THVPHWQSRLSEEDKELAVLLVDHI 527 (1040)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~----------~~~~----~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l 527 (1040)
T Consensus 456 ~L~~l~~wv~~~girWGld~~~~~~l~~pa~~~ntW~~Gl~RmLlgyam~e~~~~wqg~l~~~~v~g~~~El~g----~L 531 (1078)
T COG1330 456 ELLTLRHWVEESGIRWGLDSTHRRELGLPATGQNTWRFGLERMLLGYAMDEDAGEWQGVLPYDEVGGLRAELAG----KL 531 (1078)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHH----HH
T ss_conf 68999999985287236574444331688300336999999998604455520122256765610012899999----99
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99999987501100221023788999999999997236763211145665777999999998664213766447788999
Q gi|254780823|r 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 (1040)
Q Consensus 528 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 607 (1040)
T Consensus 532 a~fl~~L---~~~~~~l~q~~~~~~W~~~l~~Ll~~ff~~~~~~~~~l~~--i~~~~~~~~~~~~~a~~~~~l~~~~l~~ 606 (1078)
T COG1330 532 AHFLERL---SAWYRGLSQPAYLEEWREILSDLLDDFFLSDTDEEAALTI--LEFKWVPFIADSLSANYLKELPLDVLRD 606 (1078)
T ss_pred HHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9999999---9999986477849999999999999981689506789999--9998889998655523342158999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-HHHHHHHHHH
Q ss_conf 999862244335667787737980343335665863785286311345666667648967885648999-6678889999
Q gi|254780823|r 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-AEKYIGQAAH 686 (1040)
Q Consensus 608 ~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~-~e~~~~~~~~ 686 (1040)
T Consensus 607 ~~~~~l~~~~~~~~f-l~G~vnfctl~PmrsiPfkvVCllGmndg~~Pr~~~~~~f---dLm~~~~~~gDrsrrddDryL 682 (1078)
T COG1330 607 ILAALLLDESISQRF-LAGSVNFCTLVPMRSIPFKVVCLLGMNDGDFPRQNSPDGF---DLMAKDPRKGDRSRRDDDRYL 682 (1078)
T ss_pred HHHHHCCCCCCCCCE-EEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCH---HHHHHCCCCCCCCCCCHHHHH
T ss_conf 998741478866650-1023204543003676747788704767888865687632---566535344542243048999
Q ss_pred HHHHHHCCC-EEEEEEECCC--CCCCCCCCHHHHHHHHCCCC-----CC----HHHCCC-------------CC---CCH
Q ss_conf 999985598-5999920467--77665665378887731473-----10----000113-------------65---322
Q gi|254780823|r 687 DFEMANGTR-HLIYTRSLRE--NNIPTIASRWLQRLLVLGGT-----DF----FDNLKK-------------RG---QCY 738 (1040)
Q Consensus 687 ~~~~~~~a~-~v~lt~~~~~--~~~~~~ps~~l~~l~~~~~~-----~~----~~~~~~-------------~~---~~~ 738 (1040)
T Consensus 683 FLeaLisA~~~lyISYiGrsi~d~~~r~PSvll~eLld~i~~~~~~~g~~~~~~~~l~~~H~~q~Fs~~~f~~~~~~sfa 762 (1078)
T COG1330 683 FLEALISAQEQLYISYIGRSIRDNSERPPSVLLNELLDYIDQSYSLPGDEYRIAKHLLELHPLQPFSPRNFQAGELQSFA 762 (1078)
T ss_pred HHHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCC
T ss_conf 99999975564578884255566887898188999999877761688647899876774089866787773764101358
Q ss_pred HHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC---HHHHHHHHH
Q ss_conf 3478752101234--34547556763001246778004577642836888976328888872124899---889989999
Q gi|254780823|r 739 LDWTRKLDYTTKQ--PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD---RTDRGTLFH 813 (1040)
Q Consensus 739 ~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~---a~~~GtlvH 813 (1040)
T Consensus 763 ~~~l~~a~~~~~~~~~~~~f~~p~-~~~~~~~el~L~~L~~F~~~Pv~~Ffq~~L~v~~~~~~~~~~d~e~f~~d~L~~~ 841 (1078)
T COG1330 763 PEWLPAAKQLQGKRLSPAEFIQPL-LPLEPPAELNLDELIRFWSHPVKHFFQQRLGVKFPDQDEEIEDSEPFELDGLSRY 841 (1078)
T ss_pred HHHHHHHHHHHCCCCCCHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHH
T ss_conf 777788898616888954534676-6689920057999999997789999998248878844443277565444540032
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
Q ss_conf 9999998612589834789999999999965327986699999----999999999999999732468859999965688
Q gi|254780823|r 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW----RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 (1040)
Q Consensus 814 ~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~ 889 (1040)
T Consensus 842 ~i~~~l~~~-l~~-~d~a~~~~~~----~~~g~LP~~~fg~~~~~~~~~~~~~la~~v~-~~~~~~--~~~--~~i--~~ 908 (1078)
T COG1330 842 QINERLLEG-LDE-QDDAERQLRR----RLQGDLPYGEFGVIFADQIREEAKPLANAVL-YSIEQP--GQS--VEI--DL 908 (1078)
T ss_pred HHHHHHHHH-HHH-HHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHCC--CCC--EEE--EC
T ss_conf 289999976-531-1257899998----7427999770689999999887899999999-875478--975--654--02
Q ss_pred EECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 9788237999999788887998589997268534688798423012169999999
Q gi|254780823|r 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 (1040)
Q Consensus 890 ~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~ 944 (1040)
T Consensus 909 ~i~--gv~l~G~l~~~~--~~g~---~r~~~~~~~~~~~l------~~wle~li~ 950 (1078)
T COG1330 909 TIH--GVRLKGWLLQLY--GDGL---VRWRYGKPNDKQLL------ALWLEHLIY 950 (1078)
T ss_pred CCC--CEEEEEEHHHHC--CCCC---EEEECCCCCCHHHH------HHHHHHHHH
T ss_conf 107--478875314334--7981---46405788707799------999999999