HHsearch alignment for GI: 254780823 and conserved domain: TIGR00372
>TIGR00372 cas4 CRISPR-associated protein Cas4; InterPro: IPR013343 This entry consists of conserved proteins found in many prokaryotic genomes whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis suggests that they be nucleases like RecB (IPR004586 from INTERPRO), functioning as part of a hypothetical DNA repair system , . .
Probab=98.62 E-value=1.3e-06 Score=59.81 Aligned_cols=194 Identities=16% Similarity=0.110 Sum_probs=109.0
Q ss_pred CCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78004577642836888976328888872124899889989999999999861258983478999999999996532798
Q gi|254780823|r 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 (1040)
Q Consensus 770 lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 849 (1040)
T Consensus 1 ~~~s~v~~Y~yCPr~~~~~~~~~~~~~~~~~--~~~m~~G~~~~~~~~~~~----------------------------- 49 (206)
T TIGR00372 1 ITVSDVKEYLYCPRKLWLMKKGGSEEESEER--KVSMEEGRLIHEEAERAV----------------------------- 49 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHHH-----------------------------
T ss_conf 9566788887512699999752554675446--501232146667876567-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCE--EEEEEEEEEEECCCC------CEEEEECCCC
Q ss_conf 66999999999999999999997324688599999656889788237--999999788887998------5899972685
Q gi|254780823|r 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI--HLTGFADRIDLLKSG------FVDITDYKTG 921 (1040)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~--~l~GrIDRid~~~dG------~~~IvDYKTG 921 (1040)
T Consensus 50 -----------r~~~~~---------~~~~~~~~~~~--v~l~~~~~g~~l~G~~D~~~~~-~~~~~~g~~~~pvE~K~~ 106 (206)
T TIGR00372 50 -----------RKFLKS---------LGFEEVKEEKE--VELKSKKYGKGLKGVIDVVLEE-DGEIGKGAEPVPVEVKSG 106 (206)
T ss_pred -----------HHHHHH---------CCCCEEEEECC--EEECCCCCCCEEECCEEEEEEE-CCCCCCCCCEEEEEEEEC
T ss_conf -----------888764---------03300222101--4532785464154014789861-564446520126767624
Q ss_pred CCCCHHHHH--CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 346887984--230121699999998288677785574213888606866554345654558988899999999999999
Q gi|254780823|r 922 DNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 (1040)
Q Consensus 922 ~~p~~~~~~--~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 999 (1040)
T Consensus 107 ~~~~~~~~~~~~~~~~Ql~aYa~~~~~~~~~~~~~i-~~~~~~y~~~~-~~~y~v~~~-------~~~~k~~~~~~~~i~ 177 (206)
T TIGR00372 107 KAKKRLLRERGLAHKLQLLAYALLLEERYGVEVSDI-VKGYLLYLEEG-KKVYEVEIS-------EELRKKAVKLIEKIE 177 (206)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH-HEEEEEEECCC-EEEEEEEEC-------HHHHHHHHHHHHHHH
T ss_conf 466776435652357899999999855218430060-02202563077-389998628-------248999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 98488988555545101566898654420
Q gi|254780823|r 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 1000 ~~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
T Consensus 178 ~~~~~~~~--P~~~~~~~kC~~C~y~~~C 204 (206)
T TIGR00372 178 KLLEGEKL--PPPPKKSRKCKFCPYREIC 204 (206)
T ss_pred HHHHCCCC--CCCCCCCCCCCCCCCCCCC
T ss_conf 99848815--5768887757775552125