>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.

Probab=100.00 E-value=3.1e-34 Score=240.94 Aligned_cols=574 Identities=13% Similarity=0.068 Sum_probs=339.7 Q ss_pred CCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCC-CEECCEEEEHHHHHHHHHHCCCCCC-CCCCCC-CCCHHHHHHHH Q ss_conf 78981332220676279689999999998511888-6514033125776565540454334-677888-88189999999 Q gi|254780823|r 37 DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK-STILPIIKSLGDVVEEKFTADLLLS-YNLNPP-VSNIQRLLELA 113 (1040) Q Consensus 37 ~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~-~~~~P~i~t~~~~~~~~~~~~~~~~-~~~~~~-~~~~~r~~~l~ 113 (1040) T Consensus 44 cgY~a~---~IaAvTFTNKAA~EMkERVA~~L~~~~~~GL-~isTFH~LGL~Ii~~E~~~lG~K~nFSlFD~~D~~all~ 119 (677) T TIGR01074 44 CGYKAK---NIAAVTFTNKAAREMKERVAKTLGKGQAKGL-TISTFHTLGLKIIRREHNALGLKSNFSLFDETDQLALLK 119 (677) T ss_pred CCCCCC---CEEEEECCHHHHHHHHHHHHHHCCCCCCCCC-EEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 587876---1689735237779999999852265455854-475205733899999998648899964206788999999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHH Q ss_conf 99999986310000001223211135697889998999999999999759997898740022020799999999999999 Q gi|254780823|r 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 (1040) Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~ 193 (1040) T Consensus 120 eL~~~~~~~d~----------------------~~l~~~~~~IS~WKNdl~tP~qa~~~A~~----~~e~~---~A~~Y~ 170 (677) T TIGR01074 120 ELLEGELKADK----------------------DLLDKLKSTISNWKNDLLTPEQALASARN----EREQT---FAHVYA 170 (677) T ss_pred HHHHHHHCCCH----------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHC----HHHHH---HHHHHH T ss_conf 87523311424----------------------89999999863654114790899998517----66899---999999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHH-------HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 999975324888989999999987-------4434422768809998345661679999999861489689982486321 Q gi|254780823|r 194 YWTERLVELNASSPVGYQIALMRA-------EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 (1040) Q Consensus 194 ~~~~~l~~~g~~d~~~~~~~~~~~-------~~~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~ 266 (1040) T Consensus 171 ~Y~~~L~~yNalDFDDLI~lP~~LL~~n~~V~~~WQ--~kirYLLVDEyQDTN~sQY~L~KlLv~~--r~~FT~VGDDDQ 246 (677) T TIGR01074 171 RYQATLRAYNALDFDDLILLPVLLLQQNEEVRNKWQ--NKIRYLLVDEYQDTNTSQYELVKLLVGD--RGNFTVVGDDDQ 246 (677) T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCEEEECCCCC T ss_conf 999998770775422378899998514978999988--5322001102345117999998875188--853567415654 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCC Q ss_conf 07888643342012333334446763689999997629996660257766645367777544420111221000000123 Q gi|254780823|r 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 (1040) Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 346 (1040) T Consensus 247 SIYsWRGA~peNL~~L~~DfP-----~LKvIKLEQNYRS~~RILkaAN~LI~NNp--------------------H~F~K 301 (677) T TIGR01074 247 SIYSWRGARPENLVLLKEDFP-----QLKVIKLEQNYRSTSRILKAANILIANNP--------------------HVFEK 301 (677) T ss_pred CHHHHHCCCHHHHHHHHHCCC-----CCEEEEECCCCCCHHHHHHHHHHHHHCCC--------------------CCCCC T ss_conf 243231667788989861586-----44165000066664669999767762274--------------------20000 Q ss_pred CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH-----HHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHH Q ss_conf 567653213378159955998999999999999986-----422984999802641135788843551377766569003 Q gi|254780823|r 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 (1040) Q Consensus 347 ~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~-----~~~~~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL 421 (1040) T Consensus 302 ~LfS~-l~~Ge~~kVi~~~NE~hEAEri~~ei~~~~~~~~~~~~Y~DyAILYRGNhQsr~lEk~L~~~rIPY~lSGGtSF 380 (677) T TIGR01074 302 KLFSE-LGEGEKIKVIECRNEEHEAERIAGEIIAHKLIDAKKTQYKDYAILYRGNHQSRLLEKALQQNRIPYKLSGGTSF 380 (677) T ss_pred CHHHH-HCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC T ss_conf 00010-01698178885178631689999999999744687463010002313125458999998626898253577143 Q ss_pred HHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 52889899999999983799978999986296545667938999999973223210455777811178887522011444 Q gi|254780823|r 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 (1040) Q Consensus 422 ~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 501 (1040) T Consensus 381 F~R~EiKDllsYlRLlvNPDDD~AFLRivn~PkReIG~aTL~KL~~~A~~~~~------------Slf~A~~~~------ 442 (677) T TIGR01074 381 FSRAEIKDLLSYLRLLVNPDDDAAFLRIVNTPKREIGSATLEKLGEYAAEKNK------------SLFEASFEL------ 442 (677) T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHCEECCCCCCCCHHHHHHHHHHHHHCCC------------CHHHHHHHH------ T ss_conf 46403777888765313799883420012589887430568889999974079------------788998776------ Q ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH Q ss_conf 43455201015534325799999998999999875011002210237889999999999972367632111456657779 Q gi|254780823|r 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 (1040) Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (1040) T Consensus 443 -----gl~~~L~~r~~~~L~~F~~wl~~i~~~~~----~~e~~~~vr~l~~~i~YE~-~L~~~~~~~k~---~e~r~~NV 509 (677) T TIGR01074 443 -----GLLQTLSGRAYEKLQRFTDWLVEIRRQAE----RSEPIEAVRSLVEDIDYEN-WLYENSESPKA---AEMRMKNV 509 (677) T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHH-HHHHHCCCCHH---HHHHHHHH T ss_conf -----48985136578889999999999999874----0385899999998613778-98852578114---67768669 Q ss_pred HHHHHHHHHHHHCCC-CCC-CCHHHHHH--HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCC Q ss_conf 999999986642137-664-47788999--99986224433566778773798034333566586378528631134566 Q gi|254780823|r 582 KTLSSLFSKIIETGS-CIK-ANAIEWID--IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 (1040) Q Consensus 582 ~~l~~~~~~~~~~~~-~~~-~~~~~~~~--~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~ 657 (1040) T Consensus 510 ~~L~~W~~~~L~~~e~~~~~m~l~~~v~~ltLrd~lEr~-~-e~e~~~d~VqLMTLHASKGLEFpYVf~~G~EEGiLPH~ 587 (677) T TIGR01074 510 EDLFSWLKEMLEGDEEDGPEMNLEQVVQRLTLRDMLERK-I-EEEEESDQVQLMTLHASKGLEFPYVFLIGMEEGILPHQ 587 (677) T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-C-CCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCC T ss_conf 999999999841788885234689999999875464177-6-45477752013465510245563115663466648875 Q ss_pred CCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCC----CCCCCCCCHHHHHHHH Q ss_conf 66676489678856489996678889999999985598-5999920467----7766566537888773 Q gi|254780823|r 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE----NNIPTIASRWLQRLLV 721 (1040) Q Consensus 658 ~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~----~~~~~~ps~~l~~l~~ 721 (1040) T Consensus 588 ~SIee---------------dNveEERRL~YVGITRA~~~L~~t~c~~RrqyGe~~~~~PSRFl~ELP~ 641 (677) T TIGR01074 588 SSIEE---------------DNVEEERRLAYVGITRAKKELTFTYCKERRQYGELVRPEPSRFLDELPQ 641 (677) T ss_pred CCCCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCH T ss_conf 54446---------------7601677766443369999999999999975685205577741003797

HHsearch alignment for GI: 254780823 and conserved domain: TIGR01074