HHsearch alignment for GI: 254780823 and conserved domain: TIGR02784

>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00  E-value=0  Score=375.72  Aligned_cols=720  Identities=14%  Similarity=0.059  Sum_probs=413.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----H----HCCCCCEEEEEECCCCCHHHHHHHHHHHH--
Q ss_conf             9999999999999999753248889899999999874434----4----22768809998345661679999999861--
Q gi|254780823|r  182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----L----MKGTKGPIIIAGSTGSIPATARLMSTVAN--  251 (1040)
Q Consensus       182 ~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~----~----~~~~~~~i~v~g~~~~~~~~~~ll~al~~--  251 (1040)
T Consensus       344 ~AAL~lA~~l~~~y~~~K~~rG~LDF~DLI~rt~~LL~r~~~g~WV~YKLD~GiDHILvDEAQDTSP~QW~iI~~LA~eF  423 (1190)
T TIGR02784       344 LAALRLAARLLQRYAALKKARGLLDFDDLIERTVALLARPSAGAWVHYKLDRGIDHILVDEAQDTSPEQWEIIQALAEEF  423 (1190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCCCEEEECCHHCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999874789876779999999708898674300101775043771220048865899999998763


Q ss_pred             -------CC----CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC----------CCCHHHHHHHHHHHCCC---CH
Q ss_conf             -------48----96899824863210788864334201233333444----------67636899999976299---96
Q gi|254780823|r  252 -------HP----NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY----------STHPQYSLAKLLDFLDI---KR  307 (1040)
Q Consensus       252 -------~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~l~~---~~  307 (1040)
T Consensus       424 F~GegAR~~sGr~~~RTiFAVGDeKQSIYSFQGA~P~~F~~~~~~~~~k~~~~~~~f~~~~L~~SFRST~dvL~~VD~vF  503 (1190)
T TIGR02784       424 FSGEGARSGSGREVERTIFAVGDEKQSIYSFQGADPERFAEERRLFSRKVRAVGRKFEDVSLTYSFRSTPDVLAAVDLVF  503 (1190)
T ss_pred             CCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf             06864024676224532688767310445456775568999988999999861002677302023058489999998874


Q ss_pred             HHCCCCCCCCCCCH--HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEE-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66025776664536--777754442011122100000012356765321337815995-599899999999999998642
Q gi|254780823|r  308 EDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE  384 (1040)
Q Consensus       308 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-a~~~~~Ea~~ia~~lr~~~~~  384 (1040)
T Consensus       504 ~dP~~~~G~~~~~~q~~~~H~a~R~~~PG~V~LWd~i~DY~~~~e~~edW~~P~D~~~~~~p~~~LAerIAa~I~~w~~~  583 (1190)
T TIGR02784       504 ADPENARGLSGDSEQAAVVHEAIRDDLPGEVDLWDLISDYKEEGEEPEDWTDPVDELGERAPEVRLAERIAAEIRAWLDR  583 (1190)
T ss_pred             CCCHHHCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf             48212148887755521237997428988588547723578788881002044570123063048999999999997189


Q ss_pred             ----C--------C-------CEEEEEE-CCCCHHHHHHHHHHHH-CCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCH
Q ss_conf             ----2--------9-------8499980-2641135788843551-3777665690035288989999999998379997
Q gi|254780823|r  385 ----N--------K-------KKSALIT-ADRNLARRVKLELTRF-GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF  443 (1040)
Q Consensus       385 ----~--------~-------~~~avv~-~d~~~~~~v~~~L~~~-gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~  443 (1040)
T Consensus       584 g~~i~vdGe~k~~g~~R~~~pGDiLvLVRkR~~l~~al~rALK~r~~iPVAGADRL~Lt~hiAV~DL~AL~rFvL~P~DD  663 (1190)
T TIGR02784       584 GEIIPVDGEDKGLGRRRAVRPGDILVLVRKRDALFSALIRALKRRKGIPVAGADRLKLTSHIAVKDLMALGRFVLQPEDD  663 (1190)
T ss_pred             CCEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             86542158776646686335575367630557799999999983589834304403467412589999999985489843


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHH
Q ss_conf             89999862965456679389999999732232104557778111788875220114444345520101553432579999
Q gi|254780823|r  444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL  523 (1040)
Q Consensus       444 ~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  523 (1040)
T Consensus       664 LSLA~lLKSPLfgl~ed~LF~LA~~R~~~esLw~~---------L~----~~~~-----------------e~~~~~~~~  713 (1190)
T TIGR02784       664 LSLAALLKSPLFGLDEDDLFALAAGRSGGESLWAA---------LR----RRAA-----------------ESTAEFAET  713 (1190)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHH---------HH----HHHC-----------------CCCHHHHHH
T ss_conf             78999981568999878999995168975208999---------99----8515-----------------788548999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99989999998750110022102378899999999999723676----32111456657779999999986642137664
Q gi|254780823|r  524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD----EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK  599 (1040)
Q Consensus       524 ~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  599 (1040)
T Consensus       714 ~~~L~~~~~-----------~ad~~~pf~Fy---a~~L~~d~g~GrshR~klL~RL-G~EA~D~lDEfL~~AL~~Er~g~  778 (1190)
T TIGR02784       714 LAVLDAWLS-----------LADFLTPFEFY---ARLLGRDDGDGRSHRRKLLARL-GAEAEDILDEFLSQALAYERTGL  778 (1190)
T ss_pred             HHHHHHHHH-----------CCCCCCCHHHH---HHHHCCCCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999971-----------34715509999---9986688998258999999841-43466899999999999872368


Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC----------------
Q ss_conf             4778899999986224433566778773798034333566586378528631134566666764----------------
Q gi|254780823|r  600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF----------------  663 (1040)
Q Consensus       600 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~----------------  663 (1040)
T Consensus       779 PgLqaFL~~L~~~d~EiKRe~d~-~r~eVRvMTVHgaKGLEAPVVfLvD~gs~~~~~~~~~~l~~~~~~g~~~~~~~~~W  857 (1190)
T TIGR02784       779 PGLQAFLSWLEAADPEIKREMDQ-ARDEVRVMTVHGAKGLEAPVVFLVDTGSKPFASQRVPKLLATGGSGDANDVKVPLW  857 (1190)
T ss_pred             CCHHHHHHHHHHCCCEEECCCCC-CCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
T ss_conf             60689999872079486125589-98878887765466566576770387723246888630121278887766403420


Q ss_pred             ------CCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH---CCC
Q ss_conf             ------896788564899966788899999999855985-9999204677766566537888773147310000---113
Q gi|254780823|r  664 ------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN---LKK  733 (1040)
Q Consensus       664 ------l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~---~~~  733 (1040)
T Consensus       858 ~~~~~~~~~~~~~a~~~~k~~~~~EyrRLLYVamTRAedrLIVcG~~~~g~~~~~~~sWy~~V~~Ala~~~~~~~~~~~~  937 (1190)
T TIGR02784       858 RPASAFDPKLSAAARERLKERAEDEYRRLLYVAMTRAEDRLIVCGYRDSGKRESPKGSWYALVKRALAAAGIAKQTPHPA  937 (1190)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCC
T ss_conf             67431477268999999986887546787899989998675443467554566887657999987354576510231235


Q ss_pred             --CCCCHHHHH------------------HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHH-CC
Q ss_conf             --653223478------------------752101234345475567630012467780045776428368889763-28
Q gi|254780823|r  734 --RGQCYLDWT------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI-LK  792 (1040)
Q Consensus       734 --~~~~~~~~~------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~-l~  792 (1040)
T Consensus       938 ~~~aegWQG~~~r~~~~~~~~~~~~~~~~~~~~~~~~aLP~~~~~p~p~~~~~~rpl~PS~~~~~i~~~~~~~~~~~~l- 1016 (1190)
T TIGR02784       938 EGEAEGWQGLAWRLRFTRRDLDPVAAEEEAAQTDTLEALPAWLRAPAPAEPALPRPLAPSGLSAAIDSAEPGEAVRSTL- 1016 (1190)
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHE-
T ss_conf             6787543220111234257731246776666666678885676214777778887426766653344678741010010-


Q ss_pred             CCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88887212--4899889989999999999861258983478999999999996532798669999999999999999999
Q gi|254780823|r  793 LDFIPHFK--KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH  870 (1040)
Q Consensus       793 l~~~~~~~--~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  870 (1040)
T Consensus      1017 lSPvl~e~~~~~~~A~~RG~~lH~LLQ~LP~~----~~~~R~~aA~ryL~~---~~~~w~~a---~R~~l~~~v~~vL~~ 1086 (1190)
T TIGR02784      1017 LSPVLGEKTAARAFALLRGTLLHRLLQHLPDL----PPEEREDAARRYLAR---SAADWPEA---EREKLLAAVLAVLDD 1086 (1190)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHH---CCCCCCHH---HHHHHHHHHHHHHCC
T ss_conf             10113787657689999999999999626798----867779999998741---02457868---899999999998416


Q ss_pred             HHHC--CCCCEEEEEEEEEEEEECCCC-EEEEEEEEEEEECCC-CCEEEEECCCCCC-C-CHHHHHCCCCCCHHHHHHHH
Q ss_conf             9732--468859999965688978823-799999978888799-8589997268534-6-88798423012169999999
Q gi|254780823|r  871 EEKI--QSSIEKIFVNIPAKMAIESIG-IHLTGFADRIDLLKS-GFVDITDYKTGDN-P-KKETAQKLIDPQLSLEAAAL  944 (1040)
Q Consensus       871 ~~~~--~~~~~~~~~E~~~~~~i~~~~-~~l~GrIDRid~~~d-G~~~IvDYKTG~~-p-~~~~~~~~~~~QL~lY~~~~  944 (1040)
T Consensus      1087 p~~~~~F~~~SRAEV~i~G~l~~~g~~P~avSG~IDRL~v~~~kk~V~iVDyKTNr~~P~~~~e~p~~Y~~QlA~Yr~~L 1166 (1190)
T TIGR02784      1087 PRLAPVFAEGSRAEVAIMGTLKEGGKQPLAVSGQIDRLAVDEDKKRVLIVDYKTNRPVPKTAEEVPPAYLRQLALYRALL 1166 (1190)
T ss_pred             CHHHHCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             01320047777321345465235889851660168887773788789998621688988897652189999999999998


Q ss_pred             HHCCCCCCCCCCCCCEEE
Q ss_conf             828867778557421388
Q gi|254780823|r  945 KAGSFSQIDCRKVANLFY  962 (1040)
Q Consensus       945 ~~~~~~~~~~~~~~~~~y  962 (1040)
T Consensus      1167 ~~l----YPg~~v~a~Ll 1180 (1190)
T TIGR02784      1167 RPL----YPGRAVEAALL 1180 (1190)
T ss_pred             HHH----CCCCEEEEEEE
T ss_conf             865----88975999888