HHsearch alignment for GI: 254780823 and conserved domain: TIGR02784
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=0 Score=375.72 Aligned_cols=720 Identities=14% Similarity=0.059 Sum_probs=413.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----H----HCCCCCEEEEEECCCCCHHHHHHHHHHHH--
Q ss_conf 9999999999999999753248889899999999874434----4----22768809998345661679999999861--
Q gi|254780823|r 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----L----MKGTKGPIIIAGSTGSIPATARLMSTVAN-- 251 (1040)
Q Consensus 182 ~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~----~----~~~~~~~i~v~g~~~~~~~~~~ll~al~~-- 251 (1040)
T Consensus 344 ~AAL~lA~~l~~~y~~~K~~rG~LDF~DLI~rt~~LL~r~~~g~WV~YKLD~GiDHILvDEAQDTSP~QW~iI~~LA~eF 423 (1190)
T TIGR02784 344 LAALRLAARLLQRYAALKKARGLLDFDDLIERTVALLARPSAGAWVHYKLDRGIDHILVDEAQDTSPEQWEIIQALAEEF 423 (1190)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCCCEEEECCHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999874789876779999999708898674300101775043771220048865899999998763
Q ss_pred -------CC----CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC----------CCCHHHHHHHHHHHCCC---CH
Q ss_conf -------48----96899824863210788864334201233333444----------67636899999976299---96
Q gi|254780823|r 252 -------HP----NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY----------STHPQYSLAKLLDFLDI---KR 307 (1040)
Q Consensus 252 -------~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~l~~---~~ 307 (1040)
T Consensus 424 F~GegAR~~sGr~~~RTiFAVGDeKQSIYSFQGA~P~~F~~~~~~~~~k~~~~~~~f~~~~L~~SFRST~dvL~~VD~vF 503 (1190)
T TIGR02784 424 FSGEGARSGSGREVERTIFAVGDEKQSIYSFQGADPERFAEERRLFSRKVRAVGRKFEDVSLTYSFRSTPDVLAAVDLVF 503 (1190)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 06864024676224532688767310445456775568999988999999861002677302023058489999998874
Q ss_pred HHCCCCCCCCCCCH--HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEE-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 66025776664536--777754442011122100000012356765321337815995-599899999999999998642
Q gi|254780823|r 308 EDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE 384 (1040)
Q Consensus 308 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-a~~~~~Ea~~ia~~lr~~~~~ 384 (1040)
T Consensus 504 ~dP~~~~G~~~~~~q~~~~H~a~R~~~PG~V~LWd~i~DY~~~~e~~edW~~P~D~~~~~~p~~~LAerIAa~I~~w~~~ 583 (1190)
T TIGR02784 504 ADPENARGLSGDSEQAAVVHEAIRDDLPGEVDLWDLISDYKEEGEEPEDWTDPVDELGERAPEVRLAERIAAEIRAWLDR 583 (1190)
T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 48212148887755521237997428988588547723578788881002044570123063048999999999997189
Q ss_pred ----C--------C-------CEEEEEE-CCCCHHHHHHHHHHHH-CCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCH
Q ss_conf ----2--------9-------8499980-2641135788843551-3777665690035288989999999998379997
Q gi|254780823|r 385 ----N--------K-------KKSALIT-ADRNLARRVKLELTRF-GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 (1040)
Q Consensus 385 ----~--------~-------~~~avv~-~d~~~~~~v~~~L~~~-gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~ 443 (1040)
T Consensus 584 g~~i~vdGe~k~~g~~R~~~pGDiLvLVRkR~~l~~al~rALK~r~~iPVAGADRL~Lt~hiAV~DL~AL~rFvL~P~DD 663 (1190)
T TIGR02784 584 GEIIPVDGEDKGLGRRRAVRPGDILVLVRKRDALFSALIRALKRRKGIPVAGADRLKLTSHIAVKDLMALGRFVLQPEDD 663 (1190)
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 86542158776646686335575367630557799999999983589834304403467412589999999985489843
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHH
Q ss_conf 89999862965456679389999999732232104557778111788875220114444345520101553432579999
Q gi|254780823|r 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 (1040)
Q Consensus 444 ~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 523 (1040)
T Consensus 664 LSLA~lLKSPLfgl~ed~LF~LA~~R~~~esLw~~---------L~----~~~~-----------------e~~~~~~~~ 713 (1190)
T TIGR02784 664 LSLAALLKSPLFGLDEDDLFALAAGRSGGESLWAA---------LR----RRAA-----------------ESTAEFAET 713 (1190)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHH---------HH----HHHC-----------------CCCHHHHHH
T ss_conf 78999981568999878999995168975208999---------99----8515-----------------788548999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99989999998750110022102378899999999999723676----32111456657779999999986642137664
Q gi|254780823|r 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD----EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 (1040)
Q Consensus 524 ~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 599 (1040)
T Consensus 714 ~~~L~~~~~-----------~ad~~~pf~Fy---a~~L~~d~g~GrshR~klL~RL-G~EA~D~lDEfL~~AL~~Er~g~ 778 (1190)
T TIGR02784 714 LAVLDAWLS-----------LADFLTPFEFY---ARLLGRDDGDGRSHRRKLLARL-GAEAEDILDEFLSQALAYERTGL 778 (1190)
T ss_pred HHHHHHHHH-----------CCCCCCCHHHH---HHHHCCCCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999971-----------34715509999---9986688998258999999841-43466899999999999872368
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC----------------
Q ss_conf 4778899999986224433566778773798034333566586378528631134566666764----------------
Q gi|254780823|r 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF---------------- 663 (1040)
Q Consensus 600 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~---------------- 663 (1040)
T Consensus 779 PgLqaFL~~L~~~d~EiKRe~d~-~r~eVRvMTVHgaKGLEAPVVfLvD~gs~~~~~~~~~~l~~~~~~g~~~~~~~~~W 857 (1190)
T TIGR02784 779 PGLQAFLSWLEAADPEIKREMDQ-ARDEVRVMTVHGAKGLEAPVVFLVDTGSKPFASQRVPKLLATGGSGDANDVKVPLW 857 (1190)
T ss_pred CCHHHHHHHHHHCCCEEECCCCC-CCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
T ss_conf 60689999872079486125589-98878887765466566576770387723246888630121278887766403420
Q ss_pred ------CCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH---CCC
Q ss_conf ------896788564899966788899999999855985-9999204677766566537888773147310000---113
Q gi|254780823|r 664 ------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN---LKK 733 (1040)
Q Consensus 664 ------l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~---~~~ 733 (1040)
T Consensus 858 ~~~~~~~~~~~~~a~~~~k~~~~~EyrRLLYVamTRAedrLIVcG~~~~g~~~~~~~sWy~~V~~Ala~~~~~~~~~~~~ 937 (1190)
T TIGR02784 858 RPASAFDPKLSAAARERLKERAEDEYRRLLYVAMTRAEDRLIVCGYRDSGKRESPKGSWYALVKRALAAAGIAKQTPHPA 937 (1190)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCC
T ss_conf 67431477268999999986887546787899989998675443467554566887657999987354576510231235
Q ss_pred --CCCCHHHHH------------------HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHH-CC
Q ss_conf --653223478------------------752101234345475567630012467780045776428368889763-28
Q gi|254780823|r 734 --RGQCYLDWT------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI-LK 792 (1040)
Q Consensus 734 --~~~~~~~~~------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~-l~ 792 (1040)
T Consensus 938 ~~~aegWQG~~~r~~~~~~~~~~~~~~~~~~~~~~~~aLP~~~~~p~p~~~~~~rpl~PS~~~~~i~~~~~~~~~~~~l- 1016 (1190)
T TIGR02784 938 EGEAEGWQGLAWRLRFTRRDLDPVAAEEEAAQTDTLEALPAWLRAPAPAEPALPRPLAPSGLSAAIDSAEPGEAVRSTL- 1016 (1190)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHE-
T ss_conf 6787543220111234257731246776666666678885676214777778887426766653344678741010010-
Q ss_pred CCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88887212--4899889989999999999861258983478999999999996532798669999999999999999999
Q gi|254780823|r 793 LDFIPHFK--KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 (1040)
Q Consensus 793 l~~~~~~~--~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 870 (1040)
T Consensus 1017 lSPvl~e~~~~~~~A~~RG~~lH~LLQ~LP~~----~~~~R~~aA~ryL~~---~~~~w~~a---~R~~l~~~v~~vL~~ 1086 (1190)
T TIGR02784 1017 LSPVLGEKTAARAFALLRGTLLHRLLQHLPDL----PPEEREDAARRYLAR---SAADWPEA---EREKLLAAVLAVLDD 1086 (1190)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHH---CCCCCCHH---HHHHHHHHHHHHHCC
T ss_conf 10113787657689999999999999626798----867779999998741---02457868---899999999998416
Q ss_pred HHHC--CCCCEEEEEEEEEEEEECCCC-EEEEEEEEEEEECCC-CCEEEEECCCCCC-C-CHHHHHCCCCCCHHHHHHHH
Q ss_conf 9732--468859999965688978823-799999978888799-8589997268534-6-88798423012169999999
Q gi|254780823|r 871 EEKI--QSSIEKIFVNIPAKMAIESIG-IHLTGFADRIDLLKS-GFVDITDYKTGDN-P-KKETAQKLIDPQLSLEAAAL 944 (1040)
Q Consensus 871 ~~~~--~~~~~~~~~E~~~~~~i~~~~-~~l~GrIDRid~~~d-G~~~IvDYKTG~~-p-~~~~~~~~~~~QL~lY~~~~ 944 (1040)
T Consensus 1087 p~~~~~F~~~SRAEV~i~G~l~~~g~~P~avSG~IDRL~v~~~kk~V~iVDyKTNr~~P~~~~e~p~~Y~~QlA~Yr~~L 1166 (1190)
T TIGR02784 1087 PRLAPVFAEGSRAEVAIMGTLKEGGKQPLAVSGQIDRLAVDEDKKRVLIVDYKTNRPVPKTAEEVPPAYLRQLALYRALL 1166 (1190)
T ss_pred CHHHHCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 01320047777321345465235889851660168887773788789998621688988897652189999999999998
Q ss_pred HHCCCCCCCCCCCCCEEE
Q ss_conf 828867778557421388
Q gi|254780823|r 945 KAGSFSQIDCRKVANLFY 962 (1040)
Q Consensus 945 ~~~~~~~~~~~~~~~~~y 962 (1040)
T Consensus 1167 ~~l----YPg~~v~a~Ll 1180 (1190)
T TIGR02784 1167 RPL----YPGRAVEAALL 1180 (1190)
T ss_pred HHH----CCCCEEEEEEE
T ss_conf 865----88975999888