>TIGR02786 addB_alphas double-strand break repair protein AddB; InterPro: IPR014153 AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage . More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of alphaproteobacterial types..

Probab=100.00 E-value=0 Score=1259.82 Aligned_cols=1028 Identities=37% Similarity=0.639 Sum_probs=959.4 Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCC--CEECCEEEEHHHH Q ss_conf 48983898893799999997112101123678981332220676279689999999998511888--6514033125776 Q gi|254780823|r 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLGDV 84 (1040) Q Consensus 7 ~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~--~~~~P~i~t~~~~ 84 (1040) T Consensus 1 RvfsIp~g~pFl~~la~~Ll~gRL~~gf~~~~~dP~~LA~~tiyvPTRRa~Ralr~~F~~~~~g~~~a~lLPrI~plGD~ 80 (1096) T TIGR02786 1 RVFSIPPGRPFLDALAEGLLKGRLVAGFEADGDDPLALADATIYVPTRRAARALREAFVDVLDGRSSAALLPRIRPLGDV 80 (1096) T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCC T ss_conf 92650688981689999997035667778887631107880686177068999999998625873230221411114764 Q ss_pred HHHHHHCC-------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 56554045-------43346778888818999999999999986310000001223211135697889998999999999 Q gi|254780823|r 85 VEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157 (1040) Q Consensus 85 ~~~~~~~~-------~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d 157 (1040) T Consensus 81 DeD~~~F~~~~~~~~~~~~~~LpPai~~~eR~l~LarLi~~~~~~~p~h~r~lfg~~~~~~~~~~a~a~~LA~~La~l~D 160 (1096) T TIGR02786 81 DEDEALFAAEDEVDSGAAILDLPPAISPLERLLELARLIRAWRDKLPDHVRALFGVEDVLVPAGPADAIWLARDLADLMD 160 (1096) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 65302030036678886666578788535789999999999862466899998346776357876559999999999888 Q ss_pred HHHHCCCCHH-HHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEEC Q ss_conf 9997599978-9874002202079999999999999999997532488898999999998744344-2276880999834 Q gi|254780823|r 158 IIETEEKKWE-DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGS 235 (1040) Q Consensus 158 ~~~~~~~~~~-~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~-~~~~~~~i~v~g~ 235 (1040) T Consensus 161 ~~et~g~~w~~~L~~L~~~~la~hWQ~tl~FL~Iv~~~WP~~L~E~~rs~p~arR~~lL~a~a~~w~~~PP~~PviaAGs 240 (1096) T TIGR02786 161 EMETEGVDWSEKLDDLAEDDLARHWQVTLKFLEIVTRAWPKRLAELGRSNPAARRNRLLRALAARWATNPPEGPVIAAGS 240 (1096) T ss_pred HHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 86258889897513458342458999999999999986011344524755888999999999999985789975888742 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCC Q ss_conf 56616799999998614896899824863210788864334201233-33344467636899999976299966602577 Q gi|254780823|r 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT-SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 (1040) Q Consensus 236 ~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 314 (1040) T Consensus 241 tGs~PAta~LL~vvA~LP~GaVVLPGLD~~l~e~~W~~L~~~~~~~~~f~~ps~~~HPQy~L~~LL~~~G~~R~eV~~~~ 320 (1096) T TIGR02786 241 TGSIPATADLLAVVARLPQGAVVLPGLDLDLDEEAWQALGPAGTEEDTFIEPSVFGHPQYGLKRLLDRLGVSRKEVEEWG 320 (1096) T ss_pred CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCC T ss_conf 78878999999999836589387678888888899950566511024556677788857999999998488856763158 Q ss_pred -CCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCC--CCC--CCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC-E Q ss_conf -666453677775444201112210000001235--676--5321337815995599899999999999998642298-4 Q gi|254780823|r 315 -NVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN--KIP--NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-K 388 (1040) Q Consensus 315 -~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~~~-~ 388 (1040) T Consensus 321 ~~~~~~~~~R~~~~seaLrPA~~T~~W~~~~~~~d~~a~L~~~~~a~~~~s~iEA~~~reEA~AIAlaLR~A~ed~~~~t 400 (1096) T TIGR02786 321 PDADRGLRKRERLVSEALRPAETTDAWGSQREQPDVEASLEDIAEAFANLSLIEAANEREEALAIALALREAVEDPGKKT 400 (1096) T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 87676667899999985087246677521364667778840675102465030478874699999999999872248983 Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 99980264113578884355137776656900352889899999999983799978999986296545667938999999 Q gi|254780823|r 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 (1040) Q Consensus 389 ~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~ 468 (1040) T Consensus 401 AALVTPDR~LARRV~a~L~RFGi~aDDSaG~pL~~tp~a~llrl~~~~~~~pldPv~LLs~lKHPL~~lG~~r~~~~~a~ 480 (1096) T TIGR02786 401 AALVTPDRALARRVAAELKRFGIEADDSAGRPLSQTPAAVLLRLLAEAVFAPLDPVALLSLLKHPLVRLGEERDDWRAAA 480 (1096) T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 12113015589999987653486657767742333117899999999986678805699986305653378826899988 Q ss_pred HHHHHHHHCCCCC---CCCCCCHHHHHHHHCCCC--------CCCCCCCCHHHCCCCCC------HHHHHHHHHHHHHHH Q ss_conf 9732232104557---778111788875220114--------44434552010155343------257999999989999 Q gi|254780823|r 469 NALELVALRGNKN---SYDIMDLKSLVLDRIATQ--------KNNTHVPHWQSRLSEED------KELAVLLVDHILQCI 531 (1040) Q Consensus 469 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~l 531 (1040) T Consensus 481 ~~LEL~~LRG~~~~~G~ag~~~~~~~~~~~~~a~DhGasaDa~d~~~~pa~~~~~~~~~~~~~~~~~~Ar~L~~~l~~a~ 560 (1096) T TIGR02786 481 ELLELVALRGGTPAAGRAGILALPAFFERRLLALDHGASADAADDPEVPAWHSALPEQSQALAESIEAARALCEALEIAI 560 (1096) T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 62215653486667785115658999877631122676666554531002432146312450224899999999999986 Q ss_pred HHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHH Q ss_conf 998750110022----1023788999999999997236763211145665777999999998664213--7664477889 Q gi|254780823|r 532 TPLVTYKTNKNS----TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--SCIKANAIEW 605 (1040) Q Consensus 532 ~~l~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~ 605 (1040) T Consensus 561 ~Pl~~~~~~~~~~~raftdklPl~e~a~~~~~~~e~l~~d~~~~l~~~~~~~~G~~la~~~~~l~~~~~~~~l~~~~~~~ 640 (1096) T TIGR02786 561 EPLESLAGRREELDRAFTDKLPLAELAEATVELLEALSRDEEGWLAALYEGEAGHKLASLLAELLSSAADHGLDFDASDW 640 (1096) T ss_pred HHHHHHHHCHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH T ss_conf 30899861102102033303788999999999999727898888677756778999999999863123354555465506 Q ss_pred HHHHHHHHCCCCCC-CCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHH Q ss_conf 99999862244335-66778773798034333566586378528631134566666764896788564899966788899 Q gi|254780823|r 606 IDIITRLIDGETVK-PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 (1040) Q Consensus 606 ~~~l~~~~~~~~~~-~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~ 684 (1040) T Consensus 641 ~~~~~~L~~~~~VrG~~~~~hPRi~IwG~LEARLq~~D~~v~GGLNEGvWP~~~~~DPfLSR~Mr~~~GL~pPERRIGls 720 (1096) T TIGR02786 641 PDVLQALVATEAVRGPRDGGHPRIFIWGALEARLQTADLLVIGGLNEGVWPPATRNDPFLSRPMRHELGLPPPERRIGLS 720 (1096) T ss_pred HHHHHHHHCCCCEECCCCCCCCCEEEHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHH T ss_conf 89999851686155888888885120367888875422006700236788666677787880555631788723554101 Q ss_pred HHHHHH-HHCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCC-------CCCHHHCCCCCCCHHHHHHHHHCCCC-CCCCC Q ss_conf 999999-8559859999204677766566537888773147-------31000011365322347875210123-43454 Q gi|254780823|r 685 AHDFEM-ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG-------TDFFDNLKKRGQCYLDWTRKLDYTTK-QPHYK 755 (1040) Q Consensus 685 ~~~~~~-~~~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 755 (1040) T Consensus 721 AHDF~~ta~Ga~~vvLtra~R~~~APaVpSRWL~RL~a~~gGlPDqGG~~~~~~~r~~G~~~~~Wa~~LD~p~~G~~~~~ 800 (1096) T TIGR02786 721 AHDFQQTALGAKEVVLTRAARSGGAPAVPSRWLQRLEALLGGLPDQGGADVLEELRRRGERLLHWARALDEPQDGVAPVK 800 (1096) T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC T ss_conf 77899997136503420000378699625689999999854687632589999877337078999998418878888788 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 75567630012467780045776428368889763288888721248998899899999999998612589834789999 Q gi|254780823|r 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 (1040) Q Consensus 756 ~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l 835 (1040) T Consensus 801 rP~P~PP~~~RPr~~SVTeie~L~rDPYAiYAk~ILkL~pLdPl~~~p~AA~RG~liH~ile~f~~~~~~~~~~~a~~~L 880 (1096) T TIGR02786 801 RPAPRPPVALRPRKLSVTEIETLRRDPYAIYAKHILKLRPLDPLDRDPEAADRGTLIHDILERFVEEVADPLPADAADVL 880 (1096) T ss_pred CCCCCCCHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 52235786447881355320035688217787552167767776788324663229999999998751146732179999 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE--EEECC------CCEEEEEEEEEEEE Q ss_conf 99999996532798669999999999999999999973246885999996568--89788------23799999978888 Q gi|254780823|r 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIES------IGIHLTGFADRIDL 907 (1040) Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~--~~i~~------~~~~l~GrIDRid~ 907 (1040) T Consensus 881 ~~~~~~~l~~~~~p~~~~a~W~pRf~~~A~~~~~wE~~Rr~~~~~~~~E~~~~~~~~~~~e~~~~~~g~tL~GrADRID~ 960 (1096) T TIGR02786 881 RKIGRKELASLNLPPEAEALWWPRFARIADWFADWERARRLDVRRIFAEARGRKELVGERELRAAIRGFTLSGRADRIDR 960 (1096) T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEECCEEEEEEEEEEEE T ss_conf 99999986742478758886388999999999999987443432124630040257641344000145278778767763 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCC-CCCCCEEEEEECCCCCCCC-----CC---CCC Q ss_conf 79985899972685346887984230121699999998288677785-5742138886068665543-----45---654 Q gi|254780823|r 908 LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDC-----IT---NDK 978 (1040) Q Consensus 908 ~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~-~~~~~~~y~~l~~~~~~~~-----~~---~~~ 978 (1040) T Consensus 961 ~~~G~~~I~DYKTG~pPS~kQv~~gl~pQLaLEaAll~~GaF~D~~~~~~~~~L~y~~l~g~~~~~~~~i~~~~~~r~~~ 1040 (1096) T TIGR02786 961 TADGSAAILDYKTGAPPSGKQVRAGLSPQLALEAALLMRGAFKDIGAVPTPAQLVYVRLGGNGPVKEESILSEKAKRGKK 1040 (1096) T ss_pred CCCCCEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCC T ss_conf 69884798862468895289885036277999999998188857777776102366655588865520444305556877 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 55898889999999999999998488988555545101566898654420144310 Q gi|254780823|r 979 KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034 (1040) Q Consensus 979 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~r~~ew~ 1034 (1040) T Consensus 1041 ~~~~A~~l~~eA~~~L~~Li~~Y~~p~~gY~Sr~~p~~~~~~~GDYdhLARv~EWs 1096 (1096) T TIGR02786 1041 EPKDAPDLAEEAWERLEKLIREYDDPDQGYTSRALPFKKKEYYGDYDHLARVDEWS 1096 (1096) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCC T ss_conf 87785899999999999999974488874164316222679998523414200379

HHsearch alignment for GI: 254780823 and conserved domain: TIGR02786