HHsearch alignment for GI: 254780823 and conserved domain: TIGR03623
>TIGR03623 probable DNA repair protein. Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Probab=100.00 E-value=0 Score=584.11 Aligned_cols=824 Identities=18% Similarity=0.197 Sum_probs=555.8
Q ss_pred EEEEECCHHHHHHHHHHHHH---HCCCCCEECCEEEEHHHHHHHHHHCCCCCC--CCCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 06762796899999999985---118886514033125776565540454334--67788-8881899999999999998
Q gi|254780823|r 47 VTIYVPTKRAIQELRSEFIE---ITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNP-PVSNIQRLLELARLILIWR 120 (1040)
Q Consensus 47 v~vl~ptrraa~~Lr~~l~~---~~~~~~~~~P~i~t~~~~~~~~~~~~~~~~--~~~~~-~~~~~~r~~~l~~l~~~~~ 120 (1040)
T Consensus 2 ~lvlT~n~RLar~l~~~~~~~q~~~g~~vw~tp~i~~~~~Wl~~~w~~~~~~~~~~~~p~~lL~~~qe~~lW~~iI~--- 78 (874)
T TIGR03623 2 ALVLTANNRLARTLRQEYARAQLAQGKKVWATPDILPWSQWLQRLWEEALLTGDAPELPHALLSSFQEQFLWEEVIA--- 78 (874)
T ss_pred CEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHH---
T ss_conf 47975667999999999999999769951468876249999999999998447755441443689999999999997---
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63100000012232111356978899989999999999997599978987400220207999999999999999999753
Q gi|254780823|r 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 (1040)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~ 200 (1040)
T Consensus 79 ----~~~----~~~~L---l~~~---~~A~~A~~A~~l~~~w~i~~~~~~~~~~-------~e~~~Fl~W-~~~f~~~~~ 136 (874)
T TIGR03623 79 ----QSE----PGRAL---LDVK---GAARLAQEAWQLLHEWGLPPDAGEFSLT-------EETRLFLDW-RTAFEARCR 136 (874)
T ss_pred ----CCC----CCCCC---CCHH---HHHHHHHHHHHHHHHHCCCCCHHCCCCC-------HHHHHHHHH-HHHHHHHHH
T ss_conf ----277----66543---5969---9999999999999983899421002578-------668999999-999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 24888989999999987443442276880999834566167999999986148968998248632107888643342012
Q gi|254780823|r 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 (1040)
Q Consensus 201 ~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 280 (1040)
T Consensus 137 ~~~~i~~~~l~~~l~~~~~~~~~-~~p~~i~l~GFd~l~P~~~~Ll~~L~~~--g~~v~~~~~~---------------- 197 (874)
T TIGR03623 137 KEGWIDAAQLPEQLLDLLRQGGL-KLPKQIILAGFDELTPQQQALLAALEER--GVDVQQWLPE---------------- 197 (874)
T ss_pred HCCCCCHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEEECCC----------------
T ss_conf 77985777899999999855788-9987289996797998999999999964--9757973665----------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCE
Q ss_conf 33333444676368999999762999666025776664536777754442011122100000012356765321337815
Q gi|254780823|r 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 (1040)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~ 360 (1040)
T Consensus 198 ------------------------------------------------------------------------~~~~~~~~ 205 (874)
T TIGR03623 198 ------------------------------------------------------------------------SEEQASPQ 205 (874)
T ss_pred ------------------------------------------------------------------------CCCCCCCC
T ss_conf ------------------------------------------------------------------------35667552
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHH-HHHHHHHH-------------CCCCCCCCCCHHHHCH
Q ss_conf 9955998999999999999986422-9849998026411357-88843551-------------3777665690035288
Q gi|254780823|r 361 LIEADNEREEAISIAIALRMSLDEN-KKKSALITADRNLARR-VKLELTRF-------------GINIDISAGIPLSTTL 425 (1040)
Q Consensus 361 ~~~a~~~~~Ea~~ia~~lr~~~~~~-~~~~avv~~d~~~~~~-v~~~L~~~-------------gipv~~s~g~pL~~~p 425 (1040)
T Consensus 206 ~~~~~d~e~Ei~aaA~Wa~~~l~~~p~~rigIVvp~L~~~r~~L~~~l~~~l~P~~~~~~~~~~~~~~NiSlG~pL~~~P 285 (874)
T TIGR03623 206 RLACADPEDEIRAAARWARQQLEQNPAARIGVVVPNLEELRSQLARILDDVLHPQALLPTSADAPRPFNISLGRPLAEEP 285 (874)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCH
T ss_conf 21369979999999999999862288863899778779899999999998728200277654456640223788642178
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 98999999999837999789999862965456679389999999732232104557778111788875220114444345
Q gi|254780823|r 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 (1040)
Q Consensus 426 ~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1040)
T Consensus 286 li~~AL~lL~l~~~~~~~~~~~~lL~SPy~~~~~~e~~~ra~ld~---~lr~~~~~~~---~l~~ll~~~~~-~~~---- 354 (874)
T TIGR03623 286 LVHTALLLLELAQGKLEPEEASALLRSPYIAGAEVEALARAQLDA---RLRRLAEASV---TLAQLLKRAGA-ENK---- 354 (874)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHH---HHHHHCCCCC---CHHHHHHHHHC-CCC----
T ss_conf 999999999850378789999999829975345420458999999---9997187767---89999987430-366----
Q ss_pred CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 52010155343257999999989999998750110022102378899999999999723676321114566577799999
Q gi|254780823|r 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 (1040)
Q Consensus 506 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 585 (1040)
T Consensus 355 --------~~~~~~l~~~l~~~~-------~~~~--~~~~~~~~~s~W~~~f~~~L~~~gwPg~~~L~S~EyQ~~-~~~~ 416 (874)
T TIGR03623 355 --------LYLCPLLAELLSNAM-------AFLQ--KPSSTKLLPSEWAARFQRWLKALGWPGDRALDSEEYQAV-KAWK 416 (874)
T ss_pred --------CCCCHHHHHHHHHHH-------HHHH--HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHHH
T ss_conf --------546879999999999-------9997--314356898999999999998637975566782999999-9999
Q ss_pred HHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99986642-13766447788999999862244335667787737980343335665863785286311345666667648
Q gi|254780823|r 586 SLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 (1040)
Q Consensus 586 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l 664 (1040)
T Consensus 417 ~~L~~la~Ld~~~~~~~~~eal~~L~~~l~~~~fqp~~-~~~~iQVmG~LEa~gl~Fd~lwvlg~~e~~~P~~~~~~pfi 495 (874)
T TIGR03623 417 ELLAEFAALDRVSPLLTFSEALRLLRQLAAETLFQPET-PEAPIQVLGLLEAAGLQFDALWVMGLTDEVWPAPPRPNPFL 495 (874)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCEEEECHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99999986301244578999999999998525789989-99972684124435797571788358877789999999988
Q ss_pred CHHHHHHCCCC--CHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCCCHHHH
Q ss_conf 96788564899--9667888999999998-55985999920467776656653788877314731000011365322347
Q gi|254780823|r 665 SRVMQSDLNLK--TAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 (1040)
Q Consensus 665 ~~~~r~~l~l~--~~e~~~~~~~~~~~~~-~~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 741 (1040)
T Consensus 496 P~~lqr~~~~p~~~~~~~~~~a~~~~~rl~~~A~~v~~Sy~~~~~~~~~~pSpLi~~~~~~~~~~~~~------~~~~~~ 569 (874)
T TIGR03623 496 PLALQRAVGMPHASAERELDYARQVTQRLLRSAPEVVFSYPQRDGDRELRPSPLIAHLPLKAEEDAEL------ADYQDL 569 (874)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCHHHHCC------CCCCCC
T ss_conf 99999972999999999999999999999841894899834888985357676543156311333136------665552
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87521012343454755676300124677800457764283688897632888887212489988998999999999986
Q gi|254780823|r 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 (1040)
Q Consensus 742 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~ 821 (1040)
T Consensus 570 ~~~~~~~~~~e~~~d~~a~~~~~~~~~~gg~s~L~~qa~CPf~~f~~~rL~~~~~~~~~~gl~~~~rG~i~H~~Le~~~~ 649 (874)
T TIGR03623 570 ADAVAAGRRLEVLDDAQAPPLEAGERISGGTGLLKAQAACPFRAFAQHRLGARALEEPVDGLDALERGTLVHRVLELFWE 649 (874)
T ss_pred HHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 45553001414510256766665343567289999887092999999984998889866677977765999999999999
Q ss_pred HCCCCCC------HHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
Q ss_conf 1258983------478999999999996532------7986699999999999999999999732468859999965688
Q gi|254780823|r 822 KRINKNT------PEINHLMKQIIDSHFEKE------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 (1040)
Q Consensus 822 ~~~~~~~------~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~ 889 (1040)
T Consensus 650 ~l~~~~~L~~l~~~~l~~~i~~a~~~~l~~~~~~~~~~~~~~~~~le~~rl~~~l~~~L~~e~~r~-pF~v~~~E~~~~~ 728 (874)
T TIGR03623 650 RLKNQAALNALDEAELEQLIAEAIGEALAEEEARHSQTFPERFLELEQERLLQLLLEWLELERQRP-PFEVVATEQNHSI 728 (874)
T ss_pred HHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEECCCCEE
T ss_conf 825736454189999999999999999999876434345489999999999999999999755679-9138872156415
Q ss_pred EECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCC-CHHHHHCCCCCCHHHHHHHHHHC----CCCCCCCCCCCCEEEEE
Q ss_conf 97882379999997888879985899972685346-88798423012169999999828----86777855742138886
Q gi|254780823|r 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG----SFSQIDCRKVANLFYIR 964 (1040)
Q Consensus 890 ~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p-~~~~~~~~~~~QL~lY~~~~~~~----~~~~~~~~~~~~~~y~~ 964 (1040)
T Consensus 729 ~~~--~l~l~~riDRiD~~~dG~~~IiDYKTG~~~~~~~~~~r~~~pQLplYa~~~~~~v~~i~~a~v~~---~~~~~~g 803 (874)
T TIGR03623 729 EIG--GLELKVRIDRIDRLADGRRLIIDYKTGAPSVRDWLGERPVEPQLPLYALLAEDEVAGVAFAQVRA---GKMKFSG 803 (874)
T ss_pred EEC--CEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHCC---CCCCCEE
T ss_conf 675--78997687443016999889998279999850222178444548999987158755102164315---7764100
Q ss_pred ECCCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 068665543-------456545589888999999999999999848898855554510156689865442014
Q gi|254780823|r 965 LKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 (1040)
Q Consensus 965 l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~r~ 1030 (1040)
T Consensus 804 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~w~~~L~~la~e~~~G~a~v~p~~--~~~~C~yCd~~~lCRi 874 (874)
T TIGR03623 804 LAEDKELIPGVKAFAKLKAEDEPDSWEEVLARWRQELTALAEEFSAGYAAVDPKN--SETDCRYCDLQPLCRI 874 (874)
T ss_pred ECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCHHCCCC
T ss_conf 0024433655542334213334468999999999999999999968988878999--8776887984410379