HHsearch alignment for GI: 254780823 and conserved domain: TIGR03623

>TIGR03623 probable DNA repair protein. Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Probab=100.00  E-value=0  Score=584.11  Aligned_cols=824  Identities=18%  Similarity=0.197  Sum_probs=555.8

Q ss_pred             EEEEECCHHHHHHHHHHHHH---HCCCCCEECCEEEEHHHHHHHHHHCCCCCC--CCCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf             06762796899999999985---118886514033125776565540454334--67788-8881899999999999998
Q gi|254780823|r   47 VTIYVPTKRAIQELRSEFIE---ITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNP-PVSNIQRLLELARLILIWR  120 (1040)
Q Consensus        47 v~vl~ptrraa~~Lr~~l~~---~~~~~~~~~P~i~t~~~~~~~~~~~~~~~~--~~~~~-~~~~~~r~~~l~~l~~~~~  120 (1040)
T Consensus         2 ~lvlT~n~RLar~l~~~~~~~q~~~g~~vw~tp~i~~~~~Wl~~~w~~~~~~~~~~~~p~~lL~~~qe~~lW~~iI~---   78 (874)
T TIGR03623         2 ALVLTANNRLARTLRQEYARAQLAQGKKVWATPDILPWSQWLQRLWEEALLTGDAPELPHALLSSFQEQFLWEEVIA---   78 (874)
T ss_pred             CEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHH---
T ss_conf             47975667999999999999999769951468876249999999999998447755441443689999999999997---


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63100000012232111356978899989999999999997599978987400220207999999999999999999753
Q gi|254780823|r  121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV  200 (1040)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~  200 (1040)
T Consensus        79 ----~~~----~~~~L---l~~~---~~A~~A~~A~~l~~~w~i~~~~~~~~~~-------~e~~~Fl~W-~~~f~~~~~  136 (874)
T TIGR03623        79 ----QSE----PGRAL---LDVK---GAARLAQEAWQLLHEWGLPPDAGEFSLT-------EETRLFLDW-RTAFEARCR  136 (874)
T ss_pred             ----CCC----CCCCC---CCHH---HHHHHHHHHHHHHHHHCCCCCHHCCCCC-------HHHHHHHHH-HHHHHHHHH
T ss_conf             ----277----66543---5969---9999999999999983899421002578-------668999999-999999998


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             24888989999999987443442276880999834566167999999986148968998248632107888643342012
Q gi|254780823|r  201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN  280 (1040)
Q Consensus       201 ~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  280 (1040)
T Consensus       137 ~~~~i~~~~l~~~l~~~~~~~~~-~~p~~i~l~GFd~l~P~~~~Ll~~L~~~--g~~v~~~~~~----------------  197 (874)
T TIGR03623       137 KEGWIDAAQLPEQLLDLLRQGGL-KLPKQIILAGFDELTPQQQALLAALEER--GVDVQQWLPE----------------  197 (874)
T ss_pred             HCCCCCHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEEECCC----------------
T ss_conf             77985777899999999855788-9987289996797998999999999964--9757973665----------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCE
Q ss_conf             33333444676368999999762999666025776664536777754442011122100000012356765321337815
Q gi|254780823|r  281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA  360 (1040)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~  360 (1040)
T Consensus       198 ------------------------------------------------------------------------~~~~~~~~  205 (874)
T TIGR03623       198 ------------------------------------------------------------------------SEEQASPQ  205 (874)
T ss_pred             ------------------------------------------------------------------------CCCCCCCC
T ss_conf             ------------------------------------------------------------------------35667552


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHH-HHHHHHHH-------------CCCCCCCCCCHHHHCH
Q ss_conf             9955998999999999999986422-9849998026411357-88843551-------------3777665690035288
Q gi|254780823|r  361 LIEADNEREEAISIAIALRMSLDEN-KKKSALITADRNLARR-VKLELTRF-------------GINIDISAGIPLSTTL  425 (1040)
Q Consensus       361 ~~~a~~~~~Ea~~ia~~lr~~~~~~-~~~~avv~~d~~~~~~-v~~~L~~~-------------gipv~~s~g~pL~~~p  425 (1040)
T Consensus       206 ~~~~~d~e~Ei~aaA~Wa~~~l~~~p~~rigIVvp~L~~~r~~L~~~l~~~l~P~~~~~~~~~~~~~~NiSlG~pL~~~P  285 (874)
T TIGR03623       206 RLACADPEDEIRAAARWARQQLEQNPAARIGVVVPNLEELRSQLARILDDVLHPQALLPTSADAPRPFNISLGRPLAEEP  285 (874)
T ss_pred             EECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCH
T ss_conf             21369979999999999999862288863899778779899999999998728200277654456640223788642178


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             98999999999837999789999862965456679389999999732232104557778111788875220114444345
Q gi|254780823|r  426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV  505 (1040)
Q Consensus       426 ~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  505 (1040)
T Consensus       286 li~~AL~lL~l~~~~~~~~~~~~lL~SPy~~~~~~e~~~ra~ld~---~lr~~~~~~~---~l~~ll~~~~~-~~~----  354 (874)
T TIGR03623       286 LVHTALLLLELAQGKLEPEEASALLRSPYIAGAEVEALARAQLDA---RLRRLAEASV---TLAQLLKRAGA-ENK----  354 (874)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHH---HHHHHCCCCC---CHHHHHHHHHC-CCC----
T ss_conf             999999999850378789999999829975345420458999999---9997187767---89999987430-366----


Q ss_pred             CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             52010155343257999999989999998750110022102378899999999999723676321114566577799999
Q gi|254780823|r  506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS  585 (1040)
Q Consensus       506 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  585 (1040)
T Consensus       355 --------~~~~~~l~~~l~~~~-------~~~~--~~~~~~~~~s~W~~~f~~~L~~~gwPg~~~L~S~EyQ~~-~~~~  416 (874)
T TIGR03623       355 --------LYLCPLLAELLSNAM-------AFLQ--KPSSTKLLPSEWAARFQRWLKALGWPGDRALDSEEYQAV-KAWK  416 (874)
T ss_pred             --------CCCCHHHHHHHHHHH-------HHHH--HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHHH
T ss_conf             --------546879999999999-------9997--314356898999999999998637975566782999999-9999


Q ss_pred             HHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             99986642-13766447788999999862244335667787737980343335665863785286311345666667648
Q gi|254780823|r  586 SLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL  664 (1040)
Q Consensus       586 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l  664 (1040)
T Consensus       417 ~~L~~la~Ld~~~~~~~~~eal~~L~~~l~~~~fqp~~-~~~~iQVmG~LEa~gl~Fd~lwvlg~~e~~~P~~~~~~pfi  495 (874)
T TIGR03623       417 ELLAEFAALDRVSPLLTFSEALRLLRQLAAETLFQPET-PEAPIQVLGLLEAAGLQFDALWVMGLTDEVWPAPPRPNPFL  495 (874)
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCEEEECHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             99999986301244578999999999998525789989-99972684124435797571788358877789999999988


Q ss_pred             CHHHHHHCCCC--CHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCCCHHHH
Q ss_conf             96788564899--9667888999999998-55985999920467776656653788877314731000011365322347
Q gi|254780823|r  665 SRVMQSDLNLK--TAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW  741 (1040)
Q Consensus       665 ~~~~r~~l~l~--~~e~~~~~~~~~~~~~-~~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~~~~~~~~~~~~  741 (1040)
T Consensus       496 P~~lqr~~~~p~~~~~~~~~~a~~~~~rl~~~A~~v~~Sy~~~~~~~~~~pSpLi~~~~~~~~~~~~~------~~~~~~  569 (874)
T TIGR03623       496 PLALQRAVGMPHASAERELDYARQVTQRLLRSAPEVVFSYPQRDGDRELRPSPLIAHLPLKAEEDAEL------ADYQDL  569 (874)
T ss_pred             CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCHHHHCC------CCCCCC
T ss_conf             99999972999999999999999999999841894899834888985357676543156311333136------665552


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             87521012343454755676300124677800457764283688897632888887212489988998999999999986
Q gi|254780823|r  742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK  821 (1040)
Q Consensus       742 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~  821 (1040)
T Consensus       570 ~~~~~~~~~~e~~~d~~a~~~~~~~~~~gg~s~L~~qa~CPf~~f~~~rL~~~~~~~~~~gl~~~~rG~i~H~~Le~~~~  649 (874)
T TIGR03623       570 ADAVAAGRRLEVLDDAQAPPLEAGERISGGTGLLKAQAACPFRAFAQHRLGARALEEPVDGLDALERGTLVHRVLELFWE  649 (874)
T ss_pred             HHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             45553001414510256766665343567289999887092999999984998889866677977765999999999999


Q ss_pred             HCCCCCC------HHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
Q ss_conf             1258983------478999999999996532------7986699999999999999999999732468859999965688
Q gi|254780823|r  822 KRINKNT------PEINHLMKQIIDSHFEKE------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM  889 (1040)
Q Consensus       822 ~~~~~~~------~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~  889 (1040)
T Consensus       650 ~l~~~~~L~~l~~~~l~~~i~~a~~~~l~~~~~~~~~~~~~~~~~le~~rl~~~l~~~L~~e~~r~-pF~v~~~E~~~~~  728 (874)
T TIGR03623       650 RLKNQAALNALDEAELEQLIAEAIGEALAEEEARHSQTFPERFLELEQERLLQLLLEWLELERQRP-PFEVVATEQNHSI  728 (874)
T ss_pred             HHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEECCCCEE
T ss_conf             825736454189999999999999999999876434345489999999999999999999755679-9138872156415


Q ss_pred             EECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCC-CHHHHHCCCCCCHHHHHHHHHHC----CCCCCCCCCCCCEEEEE
Q ss_conf             97882379999997888879985899972685346-88798423012169999999828----86777855742138886
Q gi|254780823|r  890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG----SFSQIDCRKVANLFYIR  964 (1040)
Q Consensus       890 ~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p-~~~~~~~~~~~QL~lY~~~~~~~----~~~~~~~~~~~~~~y~~  964 (1040)
T Consensus       729 ~~~--~l~l~~riDRiD~~~dG~~~IiDYKTG~~~~~~~~~~r~~~pQLplYa~~~~~~v~~i~~a~v~~---~~~~~~g  803 (874)
T TIGR03623       729 EIG--GLELKVRIDRIDRLADGRRLIIDYKTGAPSVRDWLGERPVEPQLPLYALLAEDEVAGVAFAQVRA---GKMKFSG  803 (874)
T ss_pred             EEC--CEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHCC---CCCCCEE
T ss_conf             675--78997687443016999889998279999850222178444548999987158755102164315---7764100


Q ss_pred             ECCCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             068665543-------456545589888999999999999999848898855554510156689865442014
Q gi|254780823|r  965 LKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 (1040)
Q Consensus       965 l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~r~ 1030 (1040)
T Consensus       804 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~w~~~L~~la~e~~~G~a~v~p~~--~~~~C~yCd~~~lCRi  874 (874)
T TIGR03623       804 LAEDKELIPGVKAFAKLKAEDEPDSWEEVLARWRQELTALAEEFSAGYAAVDPKN--SETDCRYCDLQPLCRI  874 (874)
T ss_pred             ECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCHHCCCC
T ss_conf             0024433655542334213334468999999999999999999968988878999--8776887984410379