HHsearch alignment of GI: 254780823 and MMDB domain: 1pjr_A_1-107_194-286
>1pjr_A (A:1-107,A:194-286) PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus}
Probab=97.55 E-value=0.0026 Score=37.68 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=91.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHH
Q ss_conf 88489838988937999999971121011236789813322206762796899999999985118886514033125776
Q gi|254780823|r 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 (1040)
Q Consensus 5 ~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~ 84 (1040)
+.-+..-|+|.. ++..-.......... .+.. ..++++++||+.++..+++.+....+ ....-+.+.|++++
T Consensus 25 ~~~~V~~~tGsG--KT~~~~~~i~~~l~~---~~~~---~~~il~i~~t~~~~~~l~~~~~~~~~-~~~~~~~v~t~~~~ 95 (200)
T 1pjr_A 25 GPLLIMAGAGSG--KTRVLTHRIAYLMAE---KHVA---PWNILAITFTNKAAREMRERVQSLLG-GAAEDVWISTFHSM 95 (200)
T ss_dssp SCEEEEECTTSC--HHHHHHHHHHHHHHT---TCCC---GGGEEEEESSHHHHHHHHHHHHHHHG-GGGTTSEEEEHHHH
T ss_pred CCEEEEEECCHH--HHHHHHHHHHHHHHC---CCCC---CCCEEEEECHHHHHHHHHHHHHHHHC-CCCCCCEEEEHHHH
T ss_conf 898999838427--999999999999980---9989---42299993519999999999998604-43578599749999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 56554045433467788888189999999999999863100000012232111356978899989999999999997599
Q gi|254780823|r 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 (1040)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~ 164 (1040)
......... . ..+.....
T Consensus 96 ~~~~~~~~~---------------------------~------------------------------~~d~~~~~----- 113 (200)
T 1pjr_A 96 CVRILRRDI---------------------------D------------------------------RIDLIMTT----- 113 (200)
T ss_dssp HHHHHHHHG---------------------------G------------------------------GGHHHHHH-----
T ss_pred HHHHHHHHH---------------------------H------------------------------HHHHHHHH-----
T ss_conf 999999979---------------------------9------------------------------85899999-----
Q ss_pred CHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf 97898740022020799999999999999999975324888989999999987443442276880999834566167999
Q gi|254780823|r 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 (1040)
Q Consensus 165 ~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ 244 (1040)
++.+... + ........+++.|+||++|++++.+..
T Consensus 114 ---------------------------~~~~~~~--------~----------~~~~~~~~~~~~i~vDEaQd~~~~~~~ 148 (200)
T 1pjr_A 114 ---------------------------IQLFDRV--------P----------DVLHYYQYKFQYIHIDEYQDTNRAQYT 148 (200)
T ss_dssp ---------------------------HHHHHHC--------H----------HHHHHHHHHCSEEEESSGGGCCHHHHH
T ss_pred ---------------------------HHHHCCC--------H----------HHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf ---------------------------9885049--------9----------999999864230131112421378999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99998614896899824863210788864334201
Q gi|254780823|r 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 (1040)
Q Consensus 245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 279 (1040)
++..+.+. +..++..+|++|..+.|+++.....
T Consensus 149 ~l~~~~~~--~~~~~~~GD~~Q~i~~f~ga~~~~~ 181 (200)
T 1pjr_A 149 LVKKLAER--FQNICAVGDADQSIYRWRGADIQNI 181 (200)
T ss_dssp HHHHHHTT--TCCEEEEECGGGCCCGGGTCCTHHH
T ss_pred HHHHHHCC--CCEEEEEECCCCCCCCCCCCCHHHH
T ss_conf 99987267--7628998157411245689888999