HHsearch alignment of GI: 254780823 and MMDB domain: 1uaa_A_1-102_185-277
>1uaa_A (A:1-102,A:185-277) REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli}
Probab=98.27 E-value=5.7e-05 Score=48.59 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=94.4
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHH
Q ss_conf 88489838988937999999971121011236789813322206762796899999999985118886514033125776
Q gi|254780823|r 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 (1040)
Q Consensus 5 ~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~ 84 (1040)
++-+..-|||.. ++.+-...-..+..... ..-.+++|++||+.++..+++.+.+..+....-.+.+.|++++
T Consensus 16 ~~~lV~g~~GsG--KT~~~~~~~~~ll~~~~------~~~~~il~v~~t~~a~~~~~~~i~~~~~~~~~~~~~~~t~~~~ 87 (195)
T 1uaa_A 16 GPCLVLAGAGSG--KTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTL 87 (195)
T ss_dssp SEEEECCCTTSC--HHHHHHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHHHH
T ss_pred CCEEEEEECCHH--HHHHHHHHHHHHHHHCC------CCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHH
T ss_conf 898999808447--99999999999998089------8960499875539999999999998728422378789609999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 56554045433467788888189999999999999863100000012232111356978899989999999999997599
Q gi|254780823|r 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 (1040)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~ 164 (1040)
....... ...... ..+++..
T Consensus 88 ~~~~~~~---------------------------~~~~~~---------------------------~~d~~~~------ 107 (195)
T 1uaa_A 88 GLDIIKR---------------------------EYAALG---------------------------MKDLILL------ 107 (195)
T ss_dssp HHHHHHH---------------------------HHHHTT---------------------------CCHHHHH------
T ss_pred HHHHHHH---------------------------HHHHHC---------------------------CCHHHHH------
T ss_conf 9999999---------------------------899828---------------------------9988887------
Q ss_pred CHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf 97898740022020799999999999999999975324888989999999987443442276880999834566167999
Q gi|254780823|r 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 (1040)
Q Consensus 165 ~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ 244 (1040)
....+.. ..........++++|+||++||+++.+..
T Consensus 108 ------------------------------a~~~l~~--------------~~~~~~~~~~~~~~i~iDE~QD~~~~~~~ 143 (195)
T 1uaa_A 108 ------------------------------PTLLLQA--------------NEEVRKRWQNKIRYLLVDEYQDTNTSQYE 143 (195)
T ss_dssp ------------------------------HHHHHHH--------------CHHHHHHHHTTCSEEEESCGGGCBHHHHH
T ss_pred ------------------------------HHHHHHC--------------CHHHHHHHHHHHHHCCCHHHCCCCCHHHH
T ss_conf ------------------------------7776511--------------81888998864100010110012304442
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99998614896899824863210788864334201
Q gi|254780823|r 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 (1040)
Q Consensus 245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 279 (1040)
++..+.+. +..++..+|+++..+.|+++.+...
T Consensus 144 ~l~~l~~~--~~~~~~vGD~~Q~i~~~~~a~~~~~ 176 (195)
T 1uaa_A 144 LVKLLVGS--RARFTVVGDDDQSIYSWRGARPQNL 176 (195)
T ss_dssp HHHHHHTT--TCCEEEECCGGGCCCGGGTBCTTHH
T ss_pred HCCCCCCC--CCEEEEECCCHHHHHHHHCCCCCCC
T ss_conf 00001466--5413320331011100100254322