HHsearch alignment of GI: 254780823 and MMDB domain: 1uaa_A_1-102_185-277

>1uaa_A (A:1-102,A:185-277) REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli}
Probab=98.27  E-value=5.7e-05  Score=48.59  Aligned_cols=161  Identities=12%  Similarity=0.071  Sum_probs=94.4

Q ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHH
Q ss_conf             88489838988937999999971121011236789813322206762796899999999985118886514033125776
Q gi|254780823|r    5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV   84 (1040)
Q Consensus         5 ~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~   84 (1040)
                      ++-+..-|||..  ++.+-...-..+.....      ..-.+++|++||+.++..+++.+.+..+....-.+.+.|++++
T Consensus        16 ~~~lV~g~~GsG--KT~~~~~~~~~ll~~~~------~~~~~il~v~~t~~a~~~~~~~i~~~~~~~~~~~~~~~t~~~~   87 (195)
T 1uaa_A           16 GPCLVLAGAGSG--KTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTL   87 (195)
T ss_dssp             SEEEECCCTTSC--HHHHHHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHHHH
T ss_pred             CCEEEEEECCHH--HHHHHHHHHHHHHHHCC------CCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHH
T ss_conf             898999808447--99999999999998089------8960499875539999999999998728422378789609999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             56554045433467788888189999999999999863100000012232111356978899989999999999997599
Q gi|254780823|r   85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK  164 (1040)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~  164 (1040)
                      .......                           ......                           ..+++..      
T Consensus        88 ~~~~~~~---------------------------~~~~~~---------------------------~~d~~~~------  107 (195)
T 1uaa_A           88 GLDIIKR---------------------------EYAALG---------------------------MKDLILL------  107 (195)
T ss_dssp             HHHHHHH---------------------------HHHHTT---------------------------CCHHHHH------
T ss_pred             HHHHHHH---------------------------HHHHHC---------------------------CCHHHHH------
T ss_conf             9999999---------------------------899828---------------------------9988887------


Q ss_pred             CHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf             97898740022020799999999999999999975324888989999999987443442276880999834566167999
Q gi|254780823|r  165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR  244 (1040)
Q Consensus       165 ~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~  244 (1040)
                                                    ....+..              ..........++++|+||++||+++.+..
T Consensus       108 ------------------------------a~~~l~~--------------~~~~~~~~~~~~~~i~iDE~QD~~~~~~~  143 (195)
T 1uaa_A          108 ------------------------------PTLLLQA--------------NEEVRKRWQNKIRYLLVDEYQDTNTSQYE  143 (195)
T ss_dssp             ------------------------------HHHHHHH--------------CHHHHHHHHTTCSEEEESCGGGCBHHHHH
T ss_pred             ------------------------------HHHHHHC--------------CHHHHHHHHHHHHHCCCHHHCCCCCHHHH
T ss_conf             ------------------------------7776511--------------81888998864100010110012304442


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99998614896899824863210788864334201
Q gi|254780823|r  245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST  279 (1040)
Q Consensus       245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  279 (1040)
                      ++..+.+.  +..++..+|+++..+.|+++.+...
T Consensus       144 ~l~~l~~~--~~~~~~vGD~~Q~i~~~~~a~~~~~  176 (195)
T 1uaa_A          144 LVKLLVGS--RARFTVVGDDDQSIYSWRGARPQNL  176 (195)
T ss_dssp             HHHHHHTT--TCCEEEECCGGGCCCGGGTBCTTHH
T ss_pred             HCCCCCCC--CCEEEEECCCHHHHHHHHCCCCCCC
T ss_conf             00001466--5413320331011100100254322