Query         gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1040
No_of_seqs    295 out of 1249
Neff          10.5
Searched_HMMs 33803
Date          Wed Jun  1 14:36:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780823.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3h4r_A Exodeoxyribonuclease 8  99.9 1.5E-27 4.6E-32  196.6   4.6  244  764-1026    7-263 (265)
  2 >3l0a_A Putative exonuclease;   99.9 5.2E-24 1.5E-28  173.5   8.1  220  765-1028   14-253 (266)
  3 >1w36_B RECB, exodeoxyribonucl  99.3 1.6E-11 4.6E-16   91.6   9.7   98  626-723   152-259 (303)
  4 >1w36_C RECC, exodeoxyribonucl  99.3 1.1E-10 3.2E-15   86.1  12.5   98  624-723    79-179 (190)
  5 >1uaa_A REP helicase, protein   99.2   1E-09 3.1E-14   79.7  14.1  154  355-722    31-192 (229)
  6 >1w36_B RECB, exodeoxyribonucl  99.1   7E-11 2.1E-15   87.3   6.1   76  891-967   121-211 (246)
  7 >1pjr_A PCRA; DNA repair, DNA   99.1   2E-09   6E-14   77.8  12.9  157  355-722    31-195 (275)
  8 >2is6_A DNA helicase II; hydro  98.8 5.1E-08 1.5E-12   68.6  11.1   64  355-418    31-96  (232)
  9 >1uaa_A REP helicase, protein   98.3 5.7E-05 1.7E-09   48.6  13.6  161    5-279    16-176 (195)
 10 >1w36_C RECC, exodeoxyribonucl  98.2 3.5E-05   1E-09   50.0  11.9   46  227-272   106-151 (228)
 11 >1w36_B RECB, exodeoxyribonucl  98.2   2E-05 5.8E-10   51.6  10.0   58  224-281   175-232 (243)
 12 >2is6_A DNA helicase II; hydro  98.2 7.2E-05 2.1E-09   47.9  12.3  160    5-279    23-182 (201)
 13 >1w36_C RECC, exodeoxyribonucl  97.7  0.0028 8.2E-08   37.5  23.0  201  763-1006   18-225 (228)
 14 >1pjr_A PCRA; DNA repair, DNA   97.6  0.0026 7.7E-08   37.7  11.8  157    5-279    25-181 (200)
 15 >3dmn_A Putative DNA helicase;  97.3 0.00053 1.6E-08   42.2   5.3   70  620-720    94-164 (174)
 16 >1uaa_A REP helicase, protein   96.0   0.016 4.7E-07   32.5   5.8   48  421-468     1-48  (167)
 17 >2is6_A DNA helicase II; hydro  96.0   0.017 5.1E-07   32.3   5.9   47  421-467     1-47  (143)
 18 >1w36_B RECB, exodeoxyribonucl  95.8   0.012 3.4E-07   33.4   4.3   45  422-466     1-45  (139)
 19 >1w36_D RECD, exodeoxyribonucl  95.6   0.017 5.1E-07   32.3   4.4   58  620-703   165-223 (235)
 20 >2vld_A NUCS, UPF0286 protein   95.5    0.12 3.6E-06   26.7   8.7   70  862-947     7-77  (130)
 21 >1pjr_A PCRA; DNA repair, DNA   95.0   0.042 1.2E-06   29.8   4.9   44  421-464     1-44  (163)
 22 >1w36_C RECC, exodeoxyribonucl  79.7     2.5 7.5E-05   18.1   4.0   46  138-185    35-86  (102)
 23 >3e1s_A Exodeoxyribonuclease V  65.5     1.9 5.7E-05   18.9   0.6   27  630-656    82-108 (143)
 24 >1uaa_A REP helicase, protein   39.9      14 0.00042   13.2   4.5   52  149-207    30-81  (82)
 25 >1pjr_A PCRA; DNA repair, DNA   39.3      15 0.00043   13.1   5.3   51  150-207    35-85  (86)
 26 >3e2i_A Thymidine kinase; Zn-b  33.8      18 0.00053   12.5   3.4   50  225-275   100-149 (167)
 27 >2vdu_B TRNA (guanine-N(7)-)-m  33.4      18 0.00053   12.5   1.8   16  908-923    19-34  (114)
 28 >2is6_A DNA helicase II; hydro  32.1      19 0.00056   12.4   2.6   53  150-210    34-86  (104)
 29 >2z2n_A Virginiamycin B lyase;  28.8      21 0.00063   12.0   2.7   23  901-923    45-67  (84)
 30 >2orw_A Thymidine kinase; TMTK  27.6      22 0.00067   11.9   2.8   50  225-275    75-124 (142)
 31 >2fp4_B Succinyl-COA ligase [G  27.3      23 0.00067   11.8   4.0   44  370-413    89-132 (152)
 32 >3cux_A Malate synthase; TIM b  26.8      23 0.00069   11.8   2.0   53  891-946    12-68  (155)
 33 >2j9r_A Thymidine kinase; TK1,  26.1      24 0.00071   11.7   3.6   50  225-275   100-149 (167)
 34 >1xx6_A Thymidine kinase; X-RA  21.6      29 0.00086   11.1   3.7   50  225-275    80-129 (147)

No 1  
>>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12} (A:)
Probab=99.94  E-value=1.5e-27  Score=196.62  Aligned_cols=244  Identities=13%  Similarity=-0.046  Sum_probs=151.5

Q ss_pred             CCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             01246778004577642836888976328888872124899889989999999999861258983478999999999996
Q gi|254780823|r  764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF  843 (1040)
Q Consensus       764 ~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~  843 (1040)
                      ...+..+|+|.+++|..||++||+++++++++...     .++.+||++|.+|+.++..............+........
T Consensus         7 ~~~~~~~S~S~l~~~~~Cp~~~~~~~~~~~~~~~~-----~~~~~G~~~H~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (265)
T 3h4r_A            7 YHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKT-----KTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEE   81 (265)
T ss_dssp             ----CCBCHHHHHHHHHCHHHHHHHTTSCCCCCCC-----SCCTHHHHHHHHHSSHHHHTCC------------------
T ss_pred             HCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             44899839889999985999999997378999997-----7998729999987472232123324663023456666799


Q ss_pred             HHCCC------CHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf             53279------866999999999999999999997324--6885999996568897882379999997888879985899
Q gi|254780823|r  844 EKENL------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI  915 (1040)
Q Consensus       844 ~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~I  915 (1040)
                      .....      .......+..++..++.++...+....  .......  .+..+.++..++.++|+||||+   +|.+.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~l~G~iD~i~---~~~~~I  156 (265)
T 3h4r_A           82 KAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAE--SSIYWEDPETGILCRCRPDKII---PEFHWI  156 (265)
T ss_dssp             ----------------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSS--CCEEEECTTTCCEEEECCSEEE---GGGTEE
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCE--EEEEEEECCCCEEEEEEEEEEE---CCCCEE
T ss_conf             99986555316542129999999999999982954676654202314--7899997676648888899997---799748


Q ss_pred             EECCCCCCCCHH---HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--CCCCCCCCCCCCCHHHHHHHH
Q ss_conf             972685346887---984230121699999998288677785574213888606866--554345654558988899999
Q gi|254780823|r  916 TDYKTGDNPKKE---TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF--KIDCITNDKKKYSADELSEKS  990 (1040)
Q Consensus       916 vDYKTG~~p~~~---~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~--~~~~~~~~~~~~~~~~~~~~~  990 (1040)
                      ||||||+.++..   +...++.+||++|++++++.     .+..+....|+.+..+.  ..............++..+++
T Consensus       157 iDyKTg~~~~~~~~~~~~~~~~~Ql~lY~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (265)
T 3h4r_A          157 MDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQ-----FGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEY  231 (265)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTTHHHHHHHHHHHHH-----HSSCCEEEEEEEESSCBTTBCCEEEEECCHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHH-----CCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf             89830267776532012337799999999999984-----2999863999998335677622799968999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             999999999984889885555451015668986544
Q gi|254780823|r  991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 (1040)
Q Consensus       991 ~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~ 1026 (1040)
                      .+.+..+...+.++..|    +......|.||+|+.
T Consensus       232 ~~~~~~~~~~~~~~~~~----~~~~~~~C~~C~~k~  263 (265)
T 3h4r_A          232 HRNLRTLSDCLNTDEWP----AIKTLSLPRWAKEYA  263 (265)
T ss_dssp             HHHHHHHHHHHHTCCCC----CCCCCCCCTTCTTCC
T ss_pred             HHHHHHHHHHHHCCCCC----CCCCCCCCCCCCCCC
T ss_conf             99999999999669799----986467884511000


No 2  
>>3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale} (A:)
Probab=99.90  E-value=5.2e-24  Score=173.50  Aligned_cols=220  Identities=11%  Similarity=-0.043  Sum_probs=135.6

Q ss_pred             CCCCCCCCCHHHHHHC------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             1246778004577642------8368889763288888721248998899899999999998612589834789999999
Q gi|254780823|r  765 AQPRTYSFSEIKQLIN------DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI  838 (1040)
Q Consensus       765 ~~~~~lS~S~l~~~~~------cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~  838 (1040)
                      ..+..+|+|++++|..      ||++|+++++.++++...     ++..+||++|++||.++........          
T Consensus        14 ~~~~~~S~S~l~~~~~~~~~~~cp~~~~~~~~~~~~~~~~-----~a~~~Gt~iH~~le~~~~~~~~~~~----------   78 (266)
T 3l0a_A           14 ANKEYXSVSGYKDFAGTYGKXPCEFYGXEKLNGRWEDEKS-----TALLVGSYVDSYFEGSLDQFKKDNP----------   78 (266)
T ss_dssp             HHHHCEEHHHHHHHHCBTTBCCCHHHHHHHHHTSCCCCCC-----HHHHHHHHHHHHHHTCHHHHHHHCG----------
T ss_pred             CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_conf             6786547868999844951000779999986176788898-----7899978999998727676544173----------


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEC
Q ss_conf             99996532798669999999999999999999973246885999996568897882379999997888879985899972
Q gi|254780823|r  839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY  918 (1040)
Q Consensus       839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDY  918 (1040)
                           ... ........++..+.+++..+...+...  .+.....|..+.+.++  ++.++|+|||||    +.+.||||
T Consensus        79 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~~~~--g~~l~GriD~id----~~~~IiDy  144 (266)
T 3l0a_A           79 -----EIF-TQKGELKANFKQAEEIIARIERDEYFX--KYXSGQKQVIXTGELF--GAKWKIKXDSYI----PGVAIVDL  144 (266)
T ss_dssp             -----GGB-CTTSSBCHHHHHHHHHHHHHHTCHHHH--HHTTSEEEEEEEEEET--TEEEEEEEEEEE----TTTEEEEE
T ss_pred             -----CCC-CCCCHHHHHHHHHHHHHHHHHHCCHHH--HHCCCCEEEEEEEEEC--CEEEEEEEEEEE----CCCEEEEE
T ss_conf             -----100-212056899999999999999570456--6435763789999876--937651467993----68759995


Q ss_pred             CCCCCCCHHH-----------HHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             6853468879-----------84230121699999998288677785574213888606866554345654558988899
Q gi|254780823|r  919 KTGDNPKKET-----------AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS  987 (1040)
Q Consensus       919 KTG~~p~~~~-----------~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~  987 (1040)
                      |||+.++.++           ...++..||++|++++++.     .+..+ ...++.+..+...........    ++.+
T Consensus       145 KT~~~~~~~~~~~~~~~~~~~~~~~y~~Ql~~Y~~~~~~~-----~~~~~-~~~~i~~~~~~~~~~~~~~~~----~~~i  214 (266)
T 3l0a_A          145 KVXASITDLKWVKDIGYLDFVRYWGYDIQGAVYQEIVRQN-----TGEKL-PFFIAGATKQTEPDIRIIHVT----DNYL  214 (266)
T ss_dssp             EEESCSSCCEEETTTEEECHHHHTTHHHHHHHHHHHHHHH-----HSCCC-CEEEEEEECSSSCCEEEEEEC----HHHH
T ss_pred             EECCCCCHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-----HCCCC-CEEEEEEECCCCCCEEEEECC----HHHH
T ss_conf             4336565221244112355788608399999999999998-----68987-359999977898732388479----8999


Q ss_pred             HHHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             99999999999998---488988555545101566898654420
Q gi|254780823|r  988 EKSLKNLIEIVTLL---QNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus       988 ~~~~~~l~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
                      +...+.+..++..+   .++.  |.++  + ...|.||+|..+|
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~--~~p~--~-~~~C~~C~~~~~c  253 (266)
T 3l0a_A          215 QEALHXVEXNXPRILRVKNGE--VEPD--R-CELCDCCRHNRVL  253 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS--SCCC--C-CSCSHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCC--CCCC--C-CCCCCCCCCCCHH
T ss_conf             999999999999999997598--4799--9-9979886101101


No 3  
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:444-587,B:727-885)
Probab=99.31  E-value=1.6e-11  Score=91.62  Aligned_cols=98  Identities=12%  Similarity=-0.084  Sum_probs=70.0

Q ss_pred             CCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCH-------HHHHHHHHHHHHHHHCCC-EE
Q ss_conf             7379803433356658637852863113456666676489678856489996-------678889999999985598-59
Q gi|254780823|r  626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-------EKYIGQAAHDFEMANGTR-HL  697 (1040)
Q Consensus       626 ~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~-------e~~~~~~~~~~~~~~~a~-~v  697 (1040)
                      +.|+|||+|.+||++|++|||+|++++.||......................       +......+.+|..+++|+ ++
T Consensus       152 ~~V~i~Tih~sKGLef~vV~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~rllYVA~TRA~~~L  231 (303)
T 1w36_B          152 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC  231 (303)
T ss_dssp             GSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             CEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             60578743553577632899805767787555665533343211576547577767778887889889998430555659


Q ss_pred             EEEEECCC--CCCCCCCCHHHHHHHHCC
Q ss_conf             99920467--776656653788877314
Q gi|254780823|r  698 IYTRSLRE--NNIPTIASRWLQRLLVLG  723 (1040)
Q Consensus       698 ~lt~~~~~--~~~~~~ps~~l~~l~~~~  723 (1040)
                      +++++...  ++.+..||+++.++....
T Consensus       232 ~l~~~~~~~~~~~~~~ps~~l~~l~~~~  259 (303)
T 1w36_B          232 SLGVAPLVRRRGDKKGDTDVHQSALGRL  259 (303)
T ss_dssp             EEEECCCCCSCSCCSSCCGGGGSHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9986011123577666537778777988


No 4  
>>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:371-446,C:653-739,C:781-807)
Probab=99.28  E-value=1.1e-10  Score=86.11  Aligned_cols=98  Identities=15%  Similarity=0.079  Sum_probs=75.6

Q ss_pred             CCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf             877379803433356658637852863113456666676489678856489996678889999999985598-5999920
Q gi|254780823|r  624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRS  702 (1040)
Q Consensus       624 ~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~  702 (1040)
                      ..++|+|++++.+||++|++|+++|+|+|.||.....+.+.....+...+....  .....+.+|..+++|+ ++++||+
T Consensus        79 ~~~~V~i~tih~~KglefkvV~ilGlneg~~P~~~~~~~~~~~~~~~~~~d~~~--~~eer~LfyvAltrAr~~L~iSy~  156 (190)
T 1w36_C           79 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSR--RDDDRYLFLEALISAQQKLYISYI  156 (190)
T ss_dssp             TSSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCH--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEECCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf             999379950456468886779995057565566677643110331112379622--289999999999961320043220


Q ss_pred             CCC--CCCCCCCCHHHHHHHHCC
Q ss_conf             467--776656653788877314
Q gi|254780823|r  703 LRE--NNIPTIASRWLQRLLVLG  723 (1040)
Q Consensus       703 ~~~--~~~~~~ps~~l~~l~~~~  723 (1040)
                      ..+  ++.+..||.++.++....
T Consensus       157 ~~~~~~g~~~~pS~~i~eL~~~~  179 (190)
T 1w36_C          157 GRSIQDNTCLHTRMPFDPQNYQP  179 (190)
T ss_dssp             CBCSSSCCCBCCSSTTSGGGSSS
T ss_pred             CCCCCCCHCCCCCCCCCCHHCCC
T ss_conf             21178980237777566000244


No 5  
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:278-376,A:544-673)
Probab=99.20  E-value=1e-09  Score=79.69  Aligned_cols=154  Identities=19%  Similarity=0.172  Sum_probs=115.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHH
Q ss_conf             337815995599899999999999998642---29849998026411357888435513777665690035288989999
Q gi|254780823|r  355 CFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT  431 (1040)
Q Consensus       355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~---~~~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~  431 (1040)
                      ....+.++.+.+..+|+..|+..|.+.+..   .+.+|||++++......+..+|.+.|||+.+.+|..-.         
T Consensus        31 ~g~~i~~~~~~~~~~E~~~Ia~~i~~l~~~~g~~~~dIAIL~r~~~~~~~l~~~L~~~gIP~~i~g~~~~~---------  101 (229)
T 1uaa_A           31 YGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSES---------  101 (229)
T ss_dssp             CCCCBEEEECSSHHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGGTTHHHHHHHTTCCEEESCCCC-----------
T ss_pred             CCCCEEECCCCCCCCCCCEEEECCCCHHCCCCCCHHHCEEHHHCHHHHHHHHHHHHHCCCCEEEECCCCCC---------
T ss_conf             44310001233222212100001110000247870010010201011899999999779988995896455---------


Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHC
Q ss_conf             99999837999789999862965456679389999999732232104557778111788875220114444345520101
Q gi|254780823|r  432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR  511 (1040)
Q Consensus       432 ~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  511 (1040)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (229)
T 1uaa_A          102 --------------------------------------------------------------------------------  101 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55343257999999989999998750110022102378899999999999723676321114566577799999999866
Q gi|254780823|r  512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI  591 (1040)
Q Consensus       512 ~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  591 (1040)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (229)
T 1uaa_A          102 --------------------------------------------------------------------------------  101 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             42137664477889999998622443356677877379803433356658637852863113456666676489678856
Q gi|254780823|r  592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD  671 (1040)
Q Consensus       592 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~  671 (1040)
                                                    ....++|+|||+|.++|++|++||++|++++.+|.....+.....     
T Consensus       102 ------------------------------~~~~~~V~i~TiH~aKGLEf~~V~i~~~~~~~~p~~~~~~~~~~~-----  146 (229)
T 1uaa_A          102 ------------------------------EEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNID-----  146 (229)
T ss_dssp             ------------------------------CCCCCSEEEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCH-----
T ss_pred             ------------------------------CCCCCEEEEEEHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHH-----
T ss_conf             ------------------------------566996999777442213689899977807989774458942088-----


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEECCCC----CCCCCCCHHHHHHHHC
Q ss_conf             4899966788899999999855985-9999204677----7665665378887731
Q gi|254780823|r  672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN----NIPTIASRWLQRLLVL  722 (1040)
Q Consensus       672 l~l~~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~~----~~~~~ps~~l~~l~~~  722 (1040)
                                ...+.+|..+++|++ ++++++....    .....+|+|+.++...
T Consensus       147 ----------ee~rl~yVa~TRA~~~L~l~~~~~~~~~~~~~~~~~s~~l~el~~~  192 (229)
T 1uaa_A          147 ----------EERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQD  192 (229)
T ss_dssp             ----------HHHHHHHHHHHTEEEEEEEEECSSCCGGGSCCCCCBCHHHHHSCTT
T ss_pred             ----------HHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHCCHH
T ss_conf             ----------9998899569667538899995425546776678998336553887


No 6  
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:886-964,B:1014-1180)
Probab=99.14  E-value=7e-11  Score=87.34  Aligned_cols=76  Identities=21%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             ECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCH-----------HHHHCCCCCCHHHHHHHHHHCCCCCCCC----C
Q ss_conf             788237999999788887998589997268534688-----------7984230121699999998288677785----5
Q gi|254780823|r  891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-----------ETAQKLIDPQLSLEAAALKAGSFSQIDC----R  955 (1040)
Q Consensus       891 i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~-----------~~~~~~~~~QL~lY~~~~~~~~~~~~~~----~  955 (1040)
                      +...++.|+|+||||+..+ |+++|||||||+.+..           +....+|.+||.+|+.++++--...+..    .
T Consensus       121 ~~~~~~~i~G~IDlv~~~d-d~~~IIDYKT~~~~~~~~~~~~~al~~~~~~~~Y~~QL~lYa~AL~~~~~~~V~~~ly~l  199 (246)
T 1w36_B          121 FMQVRGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH  199 (246)
T ss_dssp             SCCCEEEEEEEEEEEEBSS-SCBCCEEEECCCCCSSGGGSBHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred             CCCCEEEEEEEEEEEEEEC-CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             4454026999999999999-999999717899899830028999999998786399999999999999707267986665


Q ss_pred             CCCCEEEEEECC
Q ss_conf             742138886068
Q gi|254780823|r  956 KVANLFYIRLKQ  967 (1040)
Q Consensus       956 ~~~~~~y~~l~~  967 (1040)
                      ..++..|+.+++
T Consensus       200 ~~G~vi~iflrg  211 (246)
T 1w36_B          200 HFGGVIYLFLRG  211 (246)
T ss_dssp             HCCCCEEEESSS
T ss_pred             HCCCEEEEEECC
T ss_conf             078179999579


No 7  
>>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:287-385,A:549-724)
Probab=99.13  E-value=2e-09  Score=77.78  Aligned_cols=157  Identities=18%  Similarity=0.238  Sum_probs=116.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHH
Q ss_conf             3378159955998999999999999986422---9849998026411357888435513777665690035288989999
Q gi|254780823|r  355 CFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT  431 (1040)
Q Consensus       355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~---~~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~  431 (1040)
                      ....+.++.+.+..+|+..|+..|.+.+...   +.+|||++++......+..+|...|||+.+.++.....        
T Consensus        31 ~~~~~~~~~~~~~~~ea~~i~~~i~~l~~~~g~~~~diAIL~r~~~~~~~~~~~l~~~gIP~~~~g~~~~~~--------  102 (275)
T 1pjr_A           31 EGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKGTE--------  102 (275)
T ss_dssp             CCCCEEEEEEEEHHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEEETSCC-----------
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHCC--------
T ss_conf             798417995276678999999999999983898866514995154769999999998799899968965013--------


Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHC
Q ss_conf             99999837999789999862965456679389999999732232104557778111788875220114444345520101
Q gi|254780823|r  432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR  511 (1040)
Q Consensus       432 ~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  511 (1040)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (275)
T 1pjr_A          103 --------------------------------------------------------------------------------  102 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55343257999999989999998750110022102378899999999999723676321114566577799999999866
Q gi|254780823|r  512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI  591 (1040)
Q Consensus       512 ~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  591 (1040)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (275)
T 1pjr_A          103 --------------------------------------------------------------------------------  102 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             42137664477889999998622443356677877379803433356658637852863113456666676489678856
Q gi|254780823|r  592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD  671 (1040)
Q Consensus       592 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~  671 (1040)
                                                   .....++|+|||+|.++|++|++||+++++++.+|.......         
T Consensus       103 -----------------------------~~~~~~~V~i~TiH~aKGlE~~~V~i~~~~~~~~p~~~~~~~---------  144 (275)
T 1pjr_A          103 -----------------------------QAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLED---------  144 (275)
T ss_dssp             ---------------------------------CCCEEEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTC---------
T ss_pred             -----------------------------CCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCC---------
T ss_conf             -----------------------------455678448974220577777879982786678864001477---------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEECCC----CCCCCCCCHHHHHHHHC
Q ss_conf             4899966788899999999855985-999920467----77665665378887731
Q gi|254780823|r  672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVL  722 (1040)
Q Consensus       672 l~l~~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~----~~~~~~ps~~l~~l~~~  722 (1040)
                           .+......+.+|+.+++|++ ++++++...    ......+|+++..+...
T Consensus       145 -----~~~~~ee~RllyVA~TRAr~~L~l~~~~~~~~~~~~~~~~~s~~~~~~~~~  195 (275)
T 1pjr_A          145 -----DDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAH  195 (275)
T ss_dssp             -----HHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEETTEEECCCBCHHHHHSCGG
T ss_pred             -----CHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHH
T ss_conf             -----244799999999888378577899980603457887758998717761599


No 8  
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:284-381,A:547-680)
Probab=98.85  E-value=5.1e-08  Score=68.60  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=56.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             33781599559989999999999999864229--84999802641135788843551377766569
Q gi|254780823|r  355 CFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAG  418 (1040)
Q Consensus       355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~~--~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g  418 (1040)
                      ....+.++.+.+..+|+..|+..|.+.+..+.  .+|||++|+......+...|.+.|||+.+.++
T Consensus        31 ~g~~~~~~~~~~~~~E~~~i~~~I~~~~~~g~~~~dIAIL~r~~~~~~~l~~~L~~~gIP~~~~~~   96 (232)
T 2is6_A           31 DGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGG   96 (232)
T ss_dssp             CCSCEEEEEEEEHHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf             899617995476788899999999878751987321246641524189999999977998898589


No 9  
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:1-102,A:185-277)
Probab=98.27  E-value=5.7e-05  Score=48.59  Aligned_cols=161  Identities=12%  Similarity=0.071  Sum_probs=94.4

Q ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHH
Q ss_conf             88489838988937999999971121011236789813322206762796899999999985118886514033125776
Q gi|254780823|r    5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV   84 (1040)
Q Consensus         5 ~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~   84 (1040)
                      ++-+..-|||..  ++.+-...-..+.....      ..-.+++|++||+.++..+++.+.+..+....-.+.+.|++++
T Consensus        16 ~~~lV~g~~GsG--KT~~~~~~~~~ll~~~~------~~~~~il~v~~t~~a~~~~~~~i~~~~~~~~~~~~~~~t~~~~   87 (195)
T 1uaa_A           16 GPCLVLAGAGSG--KTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTL   87 (195)
T ss_dssp             SEEEECCCTTSC--HHHHHHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHHHH
T ss_pred             CCEEEEEECCHH--HHHHHHHHHHHHHHHCC------CCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHH
T ss_conf             898999808447--99999999999998089------8960499875539999999999998728422378789609999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             56554045433467788888189999999999999863100000012232111356978899989999999999997599
Q gi|254780823|r   85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK  164 (1040)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~  164 (1040)
                      .......                           ......                           ..+++..      
T Consensus        88 ~~~~~~~---------------------------~~~~~~---------------------------~~d~~~~------  107 (195)
T 1uaa_A           88 GLDIIKR---------------------------EYAALG---------------------------MKDLILL------  107 (195)
T ss_dssp             HHHHHHH---------------------------HHHHTT---------------------------CCHHHHH------
T ss_pred             HHHHHHH---------------------------HHHHHC---------------------------CCHHHHH------
T ss_conf             9999999---------------------------899828---------------------------9988887------


Q ss_pred             CHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf             97898740022020799999999999999999975324888989999999987443442276880999834566167999
Q gi|254780823|r  165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR  244 (1040)
Q Consensus       165 ~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~  244 (1040)
                                                    ....+..              ..........++++|+||++||+++.+..
T Consensus       108 ------------------------------a~~~l~~--------------~~~~~~~~~~~~~~i~iDE~QD~~~~~~~  143 (195)
T 1uaa_A          108 ------------------------------PTLLLQA--------------NEEVRKRWQNKIRYLLVDEYQDTNTSQYE  143 (195)
T ss_dssp             ------------------------------HHHHHHH--------------CHHHHHHHHTTCSEEEESCGGGCBHHHHH
T ss_pred             ------------------------------HHHHHHC--------------CHHHHHHHHHHHHHCCCHHHCCCCCHHHH
T ss_conf             ------------------------------7776511--------------81888998864100010110012304442


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99998614896899824863210788864334201
Q gi|254780823|r  245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST  279 (1040)
Q Consensus       245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  279 (1040)
                      ++..+.+.  +..++..+|+++..+.|+++.+...
T Consensus       144 ~l~~l~~~--~~~~~~vGD~~Q~i~~~~~a~~~~~  176 (195)
T 1uaa_A          144 LVKLLVGS--RARFTVVGDDDQSIYSWRGARPQNL  176 (195)
T ss_dssp             HHHHHHTT--TCCEEEECCGGGCCCGGGTBCTTHH
T ss_pred             HCCCCCCC--CCEEEEECCCHHHHHHHHCCCCCCC
T ss_conf             00001466--5413320331011100100254322


No 10 
>>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:1-82,C:185-330)
Probab=98.23  E-value=3.5e-05  Score=49.98  Aligned_cols=46  Identities=11%  Similarity=0.096  Sum_probs=42.1

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf             8809998345661679999999861489689982486321078886
Q gi|254780823|r  227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN  272 (1040)
Q Consensus       227 ~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~  272 (1040)
                      +.+|+|+|.+.++|.+..+|+++++.++.+.++.++|..+|.+...
T Consensus       106 P~Ri~vFGis~Lpp~~l~~L~aLs~~~dV~l~~lnPc~~yW~Di~~  151 (228)
T 1w36_C          106 PSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKD  151 (228)
T ss_dssp             CSEEEEESCCCCCHHHHHHHHHHTTTSEEEEEEECSCSSCCSCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCC
T ss_conf             8768983356489999999999862698589606868778864058


No 11 
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:1-148,B:349-443)
Probab=98.20  E-value=2e-05  Score=51.61  Aligned_cols=58  Identities=10%  Similarity=-0.022  Sum_probs=50.2

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             2768809998345661679999999861489689982486321078886433420123
Q gi|254780823|r  224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI  281 (1040)
Q Consensus       224 ~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  281 (1040)
                      ..++++|+||++||+++.+..+++.+.....+..++..+|+++..+.|+++.+.....
T Consensus       175 ~~~~~~i~iDE~QD~~~~~~~~~~~l~~~~~~~~~~~~GD~~Q~Iy~frga~~~~~~~  232 (243)
T 1w36_B          175 RTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK  232 (243)
T ss_dssp             HHHCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGCCCGGGTCCHHHHHH
T ss_pred             HHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf             8640758854476635508999999980678872798437772011002321688999


No 12 
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:1-106,A:189-283)
Probab=98.16  E-value=7.2e-05  Score=47.92  Aligned_cols=160  Identities=12%  Similarity=0.068  Sum_probs=95.6

Q ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHH
Q ss_conf             88489838988937999999971121011236789813322206762796899999999985118886514033125776
Q gi|254780823|r    5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV   84 (1040)
Q Consensus         5 ~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~   84 (1040)
                      .+-+..-+||..  ++.+-......+...   .+.+|   .+++|++||+.++..+++.+....+. ..-...+.|++++
T Consensus        23 ~~~lV~g~aGsG--KT~~~~~~i~~ll~~---~~~~~---~~il~~t~t~~a~~~l~~~l~~~~~~-~~~~~~v~t~h~~   93 (201)
T 2is6_A           23 SNLLVLAGAGSG--KTRVLVHRIAWLMSV---ENCSP---YSIMAVTFTNKAAAEMRHRIGQLMGT-SQGGMWVGTFHGL   93 (201)
T ss_dssp             SCEEEECCTTSS--HHHHHHHHHHHHHHT---SCCCG---GGEEEEESSHHHHHHHHHHHHHHHCS-CCTTCEEEEHHHH
T ss_pred             CCEEEEEECCHH--HHHHHHHHHHHHHHH---CCCCC---CCEEEEECCHHHHHHHHHHHHHHCCC-CCCCEEEEEHHHH
T ss_conf             998999828659--999999999999981---99993---40999814099999999999986277-7688399749999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             56554045433467788888189999999999999863100000012232111356978899989999999999997599
Q gi|254780823|r   85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK  164 (1040)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~  164 (1040)
                      ............                                                  .+    .+++...     
T Consensus        94 ~~~~l~~~~~~~--------------------------------------------------~~----~d~~~~a-----  114 (201)
T 2is6_A           94 AHRLLRAHHMDA--------------------------------------------------NF----AELLLRA-----  114 (201)
T ss_dssp             HHHHHHHTTTTT--------------------------------------------------TH----HHHHHHH-----
T ss_pred             HHHHHHHHHHHH--------------------------------------------------CC----CHHHHHH-----
T ss_conf             999999969980--------------------------------------------------91----0113689-----


Q ss_pred             CHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf             97898740022020799999999999999999975324888989999999987443442276880999834566167999
Q gi|254780823|r  165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR  244 (1040)
Q Consensus       165 ~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~  244 (1040)
                                                    . ..+..    ++          ........++..|+||++||+++.+..
T Consensus       115 ------------------------------~-~~l~~----~~----------~~~~~~~~~~~~i~iDE~QD~~~~~~~  149 (201)
T 2is6_A          115 ------------------------------H-ELWLN----KP----------HILQHYRERFTNILVDEFQDTNNIQYA  149 (201)
T ss_dssp             ------------------------------H-HHHHH----CH----------HHHHHHHHHCCEEEESSGGGCCHHHHH
T ss_pred             ------------------------------H-HHHHH----HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------------------------------9-99876----19----------999999887766666653000022354


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99998614896899824863210788864334201
Q gi|254780823|r  245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST  279 (1040)
Q Consensus       245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  279 (1040)
                      ++..+..  .+..++..+|+++.++.|+++.+...
T Consensus       150 ll~~l~~--~~~~~~~vGD~~QsIy~f~ga~~~~~  182 (201)
T 2is6_A          150 WIRLLAG--DTGKVMIVGDDDQSIYGWRGAQVENI  182 (201)
T ss_dssp             HHHHHHT--TTCEEEEEECGGGCCCGGGTCCTHHH
T ss_pred             HHHHCCC--CCCEEEEEECCCCHHCCCCCHHHHHH
T ss_conf             4442036--65168985136301011244066899


No 13 
>>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:808-1035)
Probab=97.71  E-value=0.0028  Score=37.51  Aligned_cols=201  Identities=11%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             CCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             0012467780045776428368889763288888721-------248998899899999999998612589834789999
Q gi|254780823|r  763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF-------KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM  835 (1040)
Q Consensus       763 ~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~-------~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l  835 (1040)
                      +...+..+|.+.+..|.++|.++|+++.|++......       ...+++.++=.+--.+|+...   .+.+.++....+
T Consensus        18 p~~~~~~i~L~~L~rF~~~P~~~fl~~rL~i~~~~~~~~~~d~Epf~ld~L~~y~L~~~ll~~~l---~~~~~~~~~~~l   94 (228)
T 1w36_C           18 PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV---EQDDAERLFRRF   94 (228)
T ss_dssp             CCCCCSCEEHHHHHHHSSSHHHHHHHTTTCCCCCCSCCCCCSSCCSSCCHHHHHHHHHHHHHHHH---TTCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HCCCHHHHHHHH
T ss_conf             98766667999999999897999999744888876555556667555660755259999999987---189989999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf             99999996532798669999999999999999999973246885999996568897882379999997888879985899
Q gi|254780823|r  836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI  915 (1040)
Q Consensus       836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~I  915 (1040)
                      ..      ....+....-..++.....-+..+............    +..+.+.++  +++|.|+++.+  ..+|   +
T Consensus        95 ~~------~G~LP~g~~G~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~l~~~--~~~L~G~l~~~--~~~~---l  157 (228)
T 1w36_C           95 RA------AGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ----SMEIDLACN--GVQITGWLPQV--QPDG---L  157 (228)
T ss_dssp             HH------HTCSCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCE----EEEEEEEET--TEEEEEEEEEE--CSSE---E
T ss_pred             HH------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CEEEEEEEC--CEEEEEEECCC--CCCC---E
T ss_conf             86------799998634499999999999999999997068888----612898668--98999988886--3783---5


Q ss_pred             EECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             97268534688798423012169999999828867778557421388860686655434565455898889999999999
Q gi|254780823|r  916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI  995 (1040)
Q Consensus       916 vDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  995 (1040)
                      |-|++|+...+ +.     ....++-+++...+      .......++.-++.....+.       +    .++....|.
T Consensus       158 v~~~~~~l~~~-~~-----l~~Wl~hL~~~a~~------~~~~~~~~~~~d~~~~~~p~-------~----~~~A~~~L~  214 (228)
T 1w36_C          158 LRWRPSLLSVA-QG-----MQLWLEHLVYCASG------GNGESRLFLRKDGEWRFPPL-------A----AEQALHYLS  214 (228)
T ss_dssp             EEECSSCCCHH-HH-----HHHHHHHHHHHHTS------CCCEEEEECGGGCEEEECCC-------C----HHHHHHHHH
T ss_pred             EEEEECCCCHH-HH-----HHHHHHHHHHHHCC------CCCCEEEEEECCCEEEECCC-------C----HHHHHHHHH
T ss_conf             99973889877-89-----99999999998269------99972899975845898898-------9----899999999


Q ss_pred             HHHHHHHCCCC
Q ss_conf             99999848898
Q gi|254780823|r  996 EIVTLLQNGEQ 1006 (1040)
Q Consensus       996 ~~~~~~~~~~~ 1006 (1040)
                      .++.-|..|..
T Consensus       215 ~ll~~~~~G~~  225 (228)
T 1w36_C          215 QLIEGYREGMS  225 (228)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999845


No 14 
>>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:1-107,A:194-286)
Probab=97.55  E-value=0.0026  Score=37.68  Aligned_cols=157  Identities=13%  Similarity=0.111  Sum_probs=91.9

Q ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHH
Q ss_conf             88489838988937999999971121011236789813322206762796899999999985118886514033125776
Q gi|254780823|r    5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV   84 (1040)
Q Consensus         5 ~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~   84 (1040)
                      +.-+..-|+|..  ++..-..........   .+..   ..++++++||+.++..+++.+....+ ....-+.+.|++++
T Consensus        25 ~~~~V~~~tGsG--KT~~~~~~i~~~l~~---~~~~---~~~il~i~~t~~~~~~l~~~~~~~~~-~~~~~~~v~t~~~~   95 (200)
T 1pjr_A           25 GPLLIMAGAGSG--KTRVLTHRIAYLMAE---KHVA---PWNILAITFTNKAAREMRERVQSLLG-GAAEDVWISTFHSM   95 (200)
T ss_dssp             SCEEEEECTTSC--HHHHHHHHHHHHHHT---TCCC---GGGEEEEESSHHHHHHHHHHHHHHHG-GGGTTSEEEEHHHH
T ss_pred             CCEEEEEECCHH--HHHHHHHHHHHHHHC---CCCC---CCCEEEEECHHHHHHHHHHHHHHHHC-CCCCCCEEEEHHHH
T ss_conf             898999838427--999999999999980---9989---42299993519999999999998604-43578599749999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             56554045433467788888189999999999999863100000012232111356978899989999999999997599
Q gi|254780823|r   85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK  164 (1040)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~  164 (1040)
                      .........                           .                              ..+.....     
T Consensus        96 ~~~~~~~~~---------------------------~------------------------------~~d~~~~~-----  113 (200)
T 1pjr_A           96 CVRILRRDI---------------------------D------------------------------RIDLIMTT-----  113 (200)
T ss_dssp             HHHHHHHHG---------------------------G------------------------------GGHHHHHH-----
T ss_pred             HHHHHHHHH---------------------------H------------------------------HHHHHHHH-----
T ss_conf             999999979---------------------------9------------------------------85899999-----


Q ss_pred             CHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf             97898740022020799999999999999999975324888989999999987443442276880999834566167999
Q gi|254780823|r  165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR  244 (1040)
Q Consensus       165 ~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~  244 (1040)
                                                 ++.+...        +          ........+++.|+||++|++++.+..
T Consensus       114 ---------------------------~~~~~~~--------~----------~~~~~~~~~~~~i~vDEaQd~~~~~~~  148 (200)
T 1pjr_A          114 ---------------------------IQLFDRV--------P----------DVLHYYQYKFQYIHIDEYQDTNRAQYT  148 (200)
T ss_dssp             ---------------------------HHHHHHC--------H----------HHHHHHHHHCSEEEESSGGGCCHHHHH
T ss_pred             ---------------------------HHHHCCC--------H----------HHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             ---------------------------9885049--------9----------999999864230131112421378999


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99998614896899824863210788864334201
Q gi|254780823|r  245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST  279 (1040)
Q Consensus       245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  279 (1040)
                      ++..+.+.  +..++..+|++|..+.|+++.....
T Consensus       149 ~l~~~~~~--~~~~~~~GD~~Q~i~~f~ga~~~~~  181 (200)
T 1pjr_A          149 LVKKLAER--FQNICAVGDADQSIYRWRGADIQNI  181 (200)
T ss_dssp             HHHHHHTT--TCCEEEEECGGGCCCGGGTCCTHHH
T ss_pred             HHHHHHCC--CCEEEEEECCCCCCCCCCCCCHHHH
T ss_conf             99987267--7628998157411245689888999


No 15 
>>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, structural genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum} (A:)
Probab=97.25  E-value=0.00053  Score=42.21  Aligned_cols=70  Identities=13%  Similarity=0.182  Sum_probs=49.9

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEE
Q ss_conf             6677877379803433356658637852863113456666676489678856489996678889999999985598-599
Q gi|254780823|r  620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLI  698 (1040)
Q Consensus       620 ~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~  698 (1040)
                      ......+.|.++|+|.++|++|++||++|++++..|....                        .+.+|..+++|+ +++
T Consensus        94 ~~~~~~~~v~v~Tih~aKGlE~~~Vil~~~~~~~~~~~~e------------------------rrllYVAiTRAk~~L~  149 (174)
T 3dmn_A           94 ENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENYQREDE------------------------RQLLYTICSRAXHELT  149 (174)
T ss_dssp             CC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTTSCSGGG------------------------HHHHHHHHTTEEEEEE
T ss_pred             CCCCCCCCEEEEEHHHHHCCCCCEEEEEECCCCCCCCHHH------------------------HHHHHHHHHHHHCEEE
T ss_conf             2335689779984545222678989998245432045888------------------------8789999876434799


Q ss_pred             EEEECCCCCCCCCCCHHHHHHH
Q ss_conf             9920467776656653788877
Q gi|254780823|r  699 YTRSLRENNIPTIASRWLQRLL  720 (1040)
Q Consensus       699 lt~~~~~~~~~~~ps~~l~~l~  720 (1040)
                      ++++.       .+|+++..+.
T Consensus       150 i~~~~-------~~s~~l~~i~  164 (174)
T 3dmn_A          150 LVAVG-------SLSPLLARVN  164 (174)
T ss_dssp             EEEES-------SBCGGGTTSC
T ss_pred             EEECC-------CCCHHHHHCC
T ss_conf             99899-------9699998389


No 16 
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:377-543)
Probab=96.05  E-value=0.016  Score=32.51  Aligned_cols=48  Identities=15%  Similarity=0.053  Sum_probs=41.4

Q ss_pred             HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             352889899999999983799978999986296545667938999999
Q gi|254780823|r  421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK  468 (1040)
Q Consensus       421 L~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~  468 (1040)
                      +.+++.|++++++|+++.+|.|..+++++|++|.++++..+.......
T Consensus         1 Fyer~eI~dila~Lr~i~np~D~~al~ril~~P~~gi~~~~l~~i~~~   48 (167)
T 1uaa_A            1 FFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEW   48 (167)
T ss_dssp             GGGCHHHHHHHHHHHHHHCTTCHHHHHHHSSTTCCCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHH
T ss_conf             003599999999999981988669999998360220113567777765


No 17 
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:382-524)
Probab=96.05  E-value=0.017  Score=32.29  Aligned_cols=47  Identities=21%  Similarity=0.123  Sum_probs=40.8

Q ss_pred             HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf             35288989999999998379997899998629654566793899999
Q gi|254780823|r  421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA  467 (1040)
Q Consensus       421 L~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~  467 (1040)
                      +.+++.|++++++++++.+|.|..+++++|++|..+.|.........
T Consensus         1 F~er~eVkdila~Lr~i~np~D~~al~ril~~P~~gig~~~l~~i~~   47 (143)
T 2is6_A            1 FFERQEIKDALSYLRLIVNRNDDAAFERVVNTPTRGIGDRTLDVVRQ   47 (143)
T ss_dssp             GGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             11449999999999998198876999999835435899999999999


No 18 
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:588-726)
Probab=95.83  E-value=0.012  Score=33.43  Aligned_cols=45  Identities=11%  Similarity=0.055  Sum_probs=39.0

Q ss_pred             HHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             528898999999999837999789999862965456679389999
Q gi|254780823|r  422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR  466 (1040)
Q Consensus       422 ~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~  466 (1040)
                      .+++.+++++++|+++.+|.|..++.++|++|+++++...+..+.
T Consensus         1 f~r~ei~dlla~Lr~l~~P~d~~al~~~l~sP~~gi~~~~l~~l~   45 (139)
T 1w36_B            1 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN   45 (139)
T ss_dssp             GGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             046999999999976147433088999983721499999999984


No 19 
>>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (D:361-595)
Probab=95.58  E-value=0.017  Score=32.32  Aligned_cols=58  Identities=12%  Similarity=0.044  Sum_probs=42.6

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEE
Q ss_conf             6677877379803433356658637852863113456666676489678856489996678889999999985598-599
Q gi|254780823|r  620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLI  698 (1040)
Q Consensus       620 ~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~  698 (1040)
                      ........+.++|+|.++|++||+||+.+.+++..+..                          .+.+|+.+++|+ +++
T Consensus       165 ~~~~~~~~v~~~TiH~sqG~E~d~Vii~~~~~~~~~~~--------------------------rrllYVAiTRAk~~L~  218 (235)
T 1w36_D          165 SRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT--------------------------RELVYTAVTRARRRLS  218 (235)
T ss_dssp             SCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCCSSSC--------------------------HHHHHHHHTTBSSCEE
T ss_pred             HHCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCHHH--------------------------HHHHHHHHHHHHCCEE
T ss_conf             57366018888477202026799799993899983355--------------------------6278789899868859


Q ss_pred             EEEEC
Q ss_conf             99204
Q gi|254780823|r  699 YTRSL  703 (1040)
Q Consensus       699 lt~~~  703 (1040)
                      ++...
T Consensus       219 i~~~~  223 (235)
T 1w36_D          219 LYADE  223 (235)
T ss_dssp             EECCT
T ss_pred             EEECH
T ss_conf             99859


No 20 
>>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} (A:122-251)
Probab=95.46  E-value=0.12  Score=26.73  Aligned_cols=70  Identities=17%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHC-CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHH
Q ss_conf             9999999999732-468859999965688978823799999978888799858999726853468879842301216999
Q gi|254780823|r  862 KISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE  940 (1040)
Q Consensus       862 ~~~~~~l~~~~~~-~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY  940 (1040)
                      +.++.++....+. ..+++.+..|..    ++      .|+||-+..+++|+++||.+|+|+...  ++    --|+.-|
T Consensus         7 ~dLe~~i~~n~~~l~~g~~~v~~E~~----~~------~g~IDll~~d~~~~~ViIElK~~~~~~--~~----i~Ql~~Y   70 (130)
T 2vld_A            7 AEXANLIFENPRVIEEGFKPIYREKP----IR------HGIVDVXGVDKDGNIVVLELKRRKADL--HA----VSQXKRY   70 (130)
T ss_dssp             HHHHHHHHHCGGGTCTTCEEEEEEEE----ET------TEEEEEEEECTTSCEEEEEECSSCBCH--HH----HHHHHHH
T ss_pred             HHHHHHHHHCHHHHCCCCEEEEEEEE----CC------CCCEEEEEEECCCCEEEEEEEECCCCH--HH----HHHHHHH
T ss_conf             99999998699986789689999997----18------886689999179999999997047987--48----9999999


Q ss_pred             HHHHHHC
Q ss_conf             9999828
Q gi|254780823|r  941 AAALKAG  947 (1040)
Q Consensus       941 ~~~~~~~  947 (1040)
                      +-.+...
T Consensus        71 ~~~~~~~   77 (130)
T 2vld_A           71 VDSLKEE   77 (130)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
T ss_conf             9998612


No 21 
>>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:386-548)
Probab=95.03  E-value=0.042  Score=29.77  Aligned_cols=44  Identities=11%  Similarity=0.113  Sum_probs=39.0

Q ss_pred             HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf             35288989999999998379997899998629654566793899
Q gi|254780823|r  421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL  464 (1040)
Q Consensus       421 L~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~  464 (1040)
                      +.+++.|++++++++++.+|.|..+++++|++|..+++......
T Consensus         1 F~er~eVkdila~Lr~~~np~d~~a~~ril~~p~~~i~~~~l~~   44 (163)
T 1pjr_A            1 FYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDK   44 (163)
T ss_dssp             GGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCTTTSCCCC-
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             12579999999999998098976999999836323577566778


No 22 
>>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:83-184)
Probab=79.71  E-value=2.5  Score=18.09  Aligned_cols=46  Identities=13%  Similarity=0.032  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC------HHCCHHHHHHHH
Q ss_conf             356978899989999999999997599978987400------220207999999
Q gi|254780823|r  138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK------NEKYGMWWLLAA  185 (1040)
Q Consensus       138 ~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~------~~~~~~~w~~~~  185 (1040)
                      ...+..+.+.||+.|+++||++..++.  +-|..-.      .-.....||..+
T Consensus        35 ~~~~~~k~~qLA~~iAdlFdqYl~yRP--dwl~~We~g~~~~~l~~~~~WQ~~L   86 (102)
T 1w36_C           35 DDSDKRKLFQLSSKAADLFDQYLVYRP--DWLAQWETGHLVEGLGEAQAWQAPL   86 (102)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHHTTSSH--HHHHHHHTTCCCTTCCTTHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             686301899999999999999984089--9999987699877787245579999


No 23 
>>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:345-425,A:493-554)
Probab=65.54  E-value=1.9  Score=18.86  Aligned_cols=27  Identities=7%  Similarity=-0.170  Sum_probs=23.1

Q ss_pred             ECCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf             803433356658637852863113456
Q gi|254780823|r  630 ILGTLESRLLNFDTLILGGLNEGVWPK  656 (1040)
Q Consensus       630 v~~~~~a~~~~~~~v~v~gl~e~~~P~  656 (1040)
                      ++|+|.++|.+|++||++...+..+..
T Consensus        82 ~~TvHk~QG~E~~~Vil~~~~~~~~~~  108 (143)
T 3e1s_A           82 ALTVHRAQGSEWGTVLGVLHEAHMPML  108 (143)
T ss_dssp             EEEHHHHTTCCEEEEEEEECGGGGGGC
T ss_pred             EEEEECCCCCCCCEEEEECCCCCCCCC
T ss_conf             816734002676859998788776424


No 24 
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:103-184)
Probab=39.87  E-value=14  Score=13.16  Aligned_cols=52  Identities=12%  Similarity=-0.072  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             99999999999975999789874002202079999999999999999997532488898
Q gi|254780823|r  149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP  207 (1040)
Q Consensus       149 A~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~  207 (1040)
                      +..+...+..+...+++|+.......    +.+.   ..+..+|+.|..++...|.+|+
T Consensus        30 ~~~~l~~IS~~Kn~~~~p~~~~~~~~----~~~~---~~~~~iy~~Y~~~l~~~n~~DF   81 (82)
T 1uaa_A           30 LQQLISTISNWKNDLKTPSQAAASAI----GERD---RIFAHCYGLYDAHLKACNVLDF   81 (82)
T ss_dssp             HHHHHHHHHHHHTTTCCTTHHHHTCC----SHHH---HHHHHHHHHHHHHHHHHTCEEH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99999876544220168888765421----0356---7788898888888876321330


No 25 
>>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:108-193)
Probab=39.30  E-value=15  Score=13.10  Aligned_cols=51  Identities=10%  Similarity=0.092  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             9999999999975999789874002202079999999999999999997532488898
Q gi|254780823|r  150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP  207 (1040)
Q Consensus       150 ~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~  207 (1040)
                      ..+...+.++...++.|++...-....    +   ...+..+|+.|...+...|.+|+
T Consensus        35 ~~il~~IS~~Kn~~~~p~~~~~~~~~~----~---~~~~~~iY~~Y~~~l~~~n~lDF   85 (86)
T 1pjr_A           35 RTILGTISAAKNELLPPEQFAKRASTY----Y---EKVVSDVYQEYQQRLLRNHSLDF   85 (86)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHTTC---C----H---HHHHHHHHHHHHHHHHHTTEECT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             999999999875158899999750016----9---99999999999999998289985


No 26 
>>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide- binding, transferase; HET: MSE; 2.01A {Staphylococcus aureus} (A:1-167)
Probab=33.75  E-value=18  Score=12.53  Aligned_cols=50  Identities=10%  Similarity=0.105  Sum_probs=39.3

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             768809998345661679999999861489689982486321078886433
Q gi|254780823|r  225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT  275 (1040)
Q Consensus       225 ~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~  275 (1040)
                      ...+.|+||+.|-++.-+...++.+++. +..+++.++|.++....|....
T Consensus       100 ~~~dvI~IDEaQF~~~~~ie~i~~l~d~-g~~Vi~agL~~d~~~~~F~~~~  149 (167)
T 3e2i_A          100 TNVDVIGIDEVQFFDDEIVSIVEKLSAD-GHRVIVAGLDXDFRGEPFEPXP  149 (167)
T ss_dssp             TTCSEEEECCGGGSCTHHHHHHHHHHHT-TCEEEEEEESBCTTSCBCTTHH
T ss_pred             CCCCEEEEECHHCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCHHH
T ss_conf             4799999981450985399999999868-9989999548771648270299


No 27 
>>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} (B:241-354)
Probab=33.44  E-value=18  Score=12.50  Aligned_cols=16  Identities=31%  Similarity=0.241  Sum_probs=13.8

Q ss_pred             CCCCCEEEEECCCCCC
Q ss_conf             7998589997268534
Q gi|254780823|r  908 LKSGFVDITDYKTGDN  923 (1040)
Q Consensus       908 ~~dG~~~IvDYKTG~~  923 (1040)
                      ..||.++|.|+|||+.
T Consensus        19 s~D~ti~iWd~~tg~~   34 (114)
T 2vdu_B           19 GGDDKIFAWDWKTGKN   34 (114)
T ss_dssp             ESSSEEEEEETTTCCE
T ss_pred             ECCCCEEEEECCCCCE
T ss_conf             5899889998988969


No 28 
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:107-188,A:525-546)
Probab=32.07  E-value=19  Score=12.35  Aligned_cols=53  Identities=6%  Similarity=-0.054  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             9999999999975999789874002202079999999999999999997532488898999
Q gi|254780823|r  150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY  210 (1040)
Q Consensus       150 ~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~  210 (1040)
                      ..+...+.++...+++|+.+....    .++    ...+..+|+.|.+.+...|.+|-...
T Consensus        34 ~~il~~IS~~Kn~~~~p~~~~~~~----~~~----~~~~a~IY~~Ye~~L~~~n~lD~~~~   86 (104)
T 2is6_A           34 RQAMWYINSQKDEGLRPHHIQSYG----NPV----EQTWQKVYQAYQEACDRAGLVDDEDL   86 (104)
T ss_dssp             HHHHHHHHHHHHTTCCTTTCCCSS----CHH----HHHHHHHHHHHHHHHHHHTEEEC--C
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHC----CHH----HHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             999999876554037868888734----789----99999999999999998499431000


No 29 
>>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, virginiamycin B hydrolase, streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* (A:182-265)
Probab=28.84  E-value=21  Score=12.00  Aligned_cols=23  Identities=9%  Similarity=-0.130  Sum_probs=16.8

Q ss_pred             EEEEEEECCCCCEEEEECCCCCC
Q ss_conf             99788887998589997268534
Q gi|254780823|r  901 FADRIDLLKSGFVDITDYKTGDN  923 (1040)
Q Consensus       901 rIDRid~~~dG~~~IvDYKTG~~  923 (1040)
                      ..+-|..++||.++|.||++++.
T Consensus        45 ~P~gia~d~~G~i~v~d~~~~~I   67 (84)
T 2z2n_A           45 RPHAITAGAGIDLWFTEWGANKI   67 (84)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEECCCEE
T ss_conf             12679999998199998159989


No 30 
>>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* (A:1-142)
Probab=27.62  E-value=22  Score=11.87  Aligned_cols=50  Identities=12%  Similarity=0.113  Sum_probs=38.4

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             768809998345661679999999861489689982486321078886433
Q gi|254780823|r  225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT  275 (1040)
Q Consensus       225 ~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~  275 (1040)
                      ...+.|+||+.|-+++.+...+..+++. +-.+++.+.|.+.....|.+..
T Consensus        75 ~~~dvI~IDEaQFf~~~~v~~l~~lad~-g~~Vi~aGL~~df~~~~F~~~~  124 (142)
T 2orw_A           75 EDTRGVFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTA  124 (142)
T ss_dssp             TTEEEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHH
T ss_pred             CCCEEEEEEEHHHCCHHHHHHHHHHEEC-CEEEEEEEEEEEECCCCHHHHH
T ss_conf             6611999850453115799997771237-8589999975211387377799


No 31 
>>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (B:244-395)
Probab=27.29  E-value=23  Score=11.83  Aligned_cols=44  Identities=16%  Similarity=0.074  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf             99999999999864229849998026411357888435513777
Q gi|254780823|r  370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI  413 (1040)
Q Consensus       370 Ea~~ia~~lr~~~~~~~~~~avv~~d~~~~~~v~~~L~~~gipv  413 (1040)
                      +...++..+....+...+.+.++...........+.|...|||+
T Consensus        89 ~~~~~~~~i~~~~~~~~kp~v~~~~~g~~~~~~~~~l~~~gipv  132 (152)
T 2fp4_B           89 CAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPI  132 (152)
T ss_dssp             HHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf             69999999999995299975899999898899999999779974


No 32 
>>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis} (A:72-167,A:336-394)
Probab=26.84  E-value=23  Score=11.78  Aligned_cols=53  Identities=28%  Similarity=0.428  Sum_probs=39.3

Q ss_pred             ECCCCEEEEEEEEEE---EECCCC-CEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             788237999999788---887998-58999726853468879842301216999999982
Q gi|254780823|r  891 IESIGIHLTGFADRI---DLLKSG-FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA  946 (1040)
Q Consensus       891 i~~~~~~l~GrIDRi---d~~~dG-~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~  946 (1040)
                      +.++.|.|+|=.||-   -.+..| ..+..|+--+..|+=+.+-.|   |+-||-.+-..
T Consensus        12 L~dRRVEITGP~drkm~inALNSgA~~~maDFEDa~sPtW~N~i~G---q~NL~dAv~~~   68 (155)
T 3cux_A           12 LEDRRVEITGPVDRKMVINALNSGAHLFMADFEDSNSPTWENAIEG---QINLRDAVKGT   68 (155)
T ss_dssp             GSCCSEEEEEESCHHHHHHHHTSSCSEEEEESSTTSCCCHHHHHHH---HHHHHHHHHTC
T ss_pred             HHCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHH---HHHHHHHHHCC
T ss_conf             6006134657999899998761699789853455789985779999---99999998476


No 33 
>>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* (A:1-167)
Probab=26.14  E-value=24  Score=11.69  Aligned_cols=50  Identities=14%  Similarity=0.131  Sum_probs=39.8

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             768809998345661679999999861489689982486321078886433
Q gi|254780823|r  225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT  275 (1040)
Q Consensus       225 ~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~  275 (1040)
                      ...+.|+||+.|-++..+...++.+... +..+++.+.|.++-...|....
T Consensus       100 ~~~dvi~IDEaQFl~~~~ie~~~~l~~~-~~~Vi~agL~~d~~~~~F~~~~  149 (167)
T 2j9r_A          100 EEMDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVP  149 (167)
T ss_dssp             SSCCEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEEEEEECCCCHHHHH
T ss_conf             4200999834111422489999999844-7744899777204387567699


No 34 
>>1xx6_A Thymidine kinase; X-RAY, NESG, northeast structural genomics consortium, protein structure initiative, PSI; HET: ADP; 2.00A {Clostridium acetobutylicum atcc 824} (A:1-147)
Probab=21.56  E-value=29  Score=11.13  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=38.9

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             768809998345661679999999861489689982486321078886433
Q gi|254780823|r  225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT  275 (1040)
Q Consensus       225 ~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~  275 (1040)
                      ...+.|.||+.|-+++.+...+..+++. +-.+++.++|.++....|....
T Consensus        80 ~~~dvI~IDE~QFf~~~~v~~~~~l~~~-g~~Vi~aGLd~df~~~~F~~~~  129 (147)
T 1xx6_A           80 EDTEVIAIDEVQFFDDEIVEIVNKIAES-GRRVICAGLDXDFRGKPFGPIP  129 (147)
T ss_dssp             TTCSEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHH
T ss_pred             CCCCEEEEECHHHCCCCHHHHHHHEECC-CCEEEEEEEECHHHHCCHHHHH
T ss_conf             5588999812432365178885511014-6268999753221326077799


Done!