Query gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Match_columns 1040 No_of_seqs 295 out of 1249 Neff 10.5 Searched_HMMs 33803 Date Wed Jun 1 14:36:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780823.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3h4r_A Exodeoxyribonuclease 8 99.9 1.5E-27 4.6E-32 196.6 4.6 244 764-1026 7-263 (265) 2 >3l0a_A Putative exonuclease; 99.9 5.2E-24 1.5E-28 173.5 8.1 220 765-1028 14-253 (266) 3 >1w36_B RECB, exodeoxyribonucl 99.3 1.6E-11 4.6E-16 91.6 9.7 98 626-723 152-259 (303) 4 >1w36_C RECC, exodeoxyribonucl 99.3 1.1E-10 3.2E-15 86.1 12.5 98 624-723 79-179 (190) 5 >1uaa_A REP helicase, protein 99.2 1E-09 3.1E-14 79.7 14.1 154 355-722 31-192 (229) 6 >1w36_B RECB, exodeoxyribonucl 99.1 7E-11 2.1E-15 87.3 6.1 76 891-967 121-211 (246) 7 >1pjr_A PCRA; DNA repair, DNA 99.1 2E-09 6E-14 77.8 12.9 157 355-722 31-195 (275) 8 >2is6_A DNA helicase II; hydro 98.8 5.1E-08 1.5E-12 68.6 11.1 64 355-418 31-96 (232) 9 >1uaa_A REP helicase, protein 98.3 5.7E-05 1.7E-09 48.6 13.6 161 5-279 16-176 (195) 10 >1w36_C RECC, exodeoxyribonucl 98.2 3.5E-05 1E-09 50.0 11.9 46 227-272 106-151 (228) 11 >1w36_B RECB, exodeoxyribonucl 98.2 2E-05 5.8E-10 51.6 10.0 58 224-281 175-232 (243) 12 >2is6_A DNA helicase II; hydro 98.2 7.2E-05 2.1E-09 47.9 12.3 160 5-279 23-182 (201) 13 >1w36_C RECC, exodeoxyribonucl 97.7 0.0028 8.2E-08 37.5 23.0 201 763-1006 18-225 (228) 14 >1pjr_A PCRA; DNA repair, DNA 97.6 0.0026 7.7E-08 37.7 11.8 157 5-279 25-181 (200) 15 >3dmn_A Putative DNA helicase; 97.3 0.00053 1.6E-08 42.2 5.3 70 620-720 94-164 (174) 16 >1uaa_A REP helicase, protein 96.0 0.016 4.7E-07 32.5 5.8 48 421-468 1-48 (167) 17 >2is6_A DNA helicase II; hydro 96.0 0.017 5.1E-07 32.3 5.9 47 421-467 1-47 (143) 18 >1w36_B RECB, exodeoxyribonucl 95.8 0.012 3.4E-07 33.4 4.3 45 422-466 1-45 (139) 19 >1w36_D RECD, exodeoxyribonucl 95.6 0.017 5.1E-07 32.3 4.4 58 620-703 165-223 (235) 20 >2vld_A NUCS, UPF0286 protein 95.5 0.12 3.6E-06 26.7 8.7 70 862-947 7-77 (130) 21 >1pjr_A PCRA; DNA repair, DNA 95.0 0.042 1.2E-06 29.8 4.9 44 421-464 1-44 (163) 22 >1w36_C RECC, exodeoxyribonucl 79.7 2.5 7.5E-05 18.1 4.0 46 138-185 35-86 (102) 23 >3e1s_A Exodeoxyribonuclease V 65.5 1.9 5.7E-05 18.9 0.6 27 630-656 82-108 (143) 24 >1uaa_A REP helicase, protein 39.9 14 0.00042 13.2 4.5 52 149-207 30-81 (82) 25 >1pjr_A PCRA; DNA repair, DNA 39.3 15 0.00043 13.1 5.3 51 150-207 35-85 (86) 26 >3e2i_A Thymidine kinase; Zn-b 33.8 18 0.00053 12.5 3.4 50 225-275 100-149 (167) 27 >2vdu_B TRNA (guanine-N(7)-)-m 33.4 18 0.00053 12.5 1.8 16 908-923 19-34 (114) 28 >2is6_A DNA helicase II; hydro 32.1 19 0.00056 12.4 2.6 53 150-210 34-86 (104) 29 >2z2n_A Virginiamycin B lyase; 28.8 21 0.00063 12.0 2.7 23 901-923 45-67 (84) 30 >2orw_A Thymidine kinase; TMTK 27.6 22 0.00067 11.9 2.8 50 225-275 75-124 (142) 31 >2fp4_B Succinyl-COA ligase [G 27.3 23 0.00067 11.8 4.0 44 370-413 89-132 (152) 32 >3cux_A Malate synthase; TIM b 26.8 23 0.00069 11.8 2.0 53 891-946 12-68 (155) 33 >2j9r_A Thymidine kinase; TK1, 26.1 24 0.00071 11.7 3.6 50 225-275 100-149 (167) 34 >1xx6_A Thymidine kinase; X-RA 21.6 29 0.00086 11.1 3.7 50 225-275 80-129 (147) No 1 >>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12} (A:) Probab=99.94 E-value=1.5e-27 Score=196.62 Aligned_cols=244 Identities=13% Similarity=-0.046 Sum_probs=151.5 Q ss_pred CCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf 01246778004577642836888976328888872124899889989999999999861258983478999999999996 Q gi|254780823|r 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 (1040) Q Consensus 764 ~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~ 843 (1040) ...+..+|+|.+++|..||++||+++++++++... .++.+||++|.+|+.++..............+........ T Consensus 7 ~~~~~~~S~S~l~~~~~Cp~~~~~~~~~~~~~~~~-----~~~~~G~~~H~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (265) T 3h4r_A 7 YHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKT-----KTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEE 81 (265) T ss_dssp ----CCBCHHHHHHHHHCHHHHHHHTTSCCCCCCC-----SCCTHHHHHHHHHSSHHHHTCC------------------ T ss_pred HCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHH T ss_conf 44899839889999985999999997378999997-----7998729999987472232123324663023456666799 Q ss_pred HHCCC------CHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEE Q ss_conf 53279------866999999999999999999997324--6885999996568897882379999997888879985899 Q gi|254780823|r 844 EKENL------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 (1040) Q Consensus 844 ~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~I 915 (1040) ..... .......+..++..++.++...+.... ....... .+..+.++..++.++|+||||+ +|.+.| T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~l~G~iD~i~---~~~~~I 156 (265) T 3h4r_A 82 KAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAE--SSIYWEDPETGILCRCRPDKII---PEFHWI 156 (265) T ss_dssp ----------------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSS--CCEEEECTTTCCEEEECCSEEE---GGGTEE T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCE--EEEEEEECCCCEEEEEEEEEEE---CCCCEE T ss_conf 99986555316542129999999999999982954676654202314--7899997676648888899997---799748 Q ss_pred EECCCCCCCCHH---HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--CCCCCCCCCCCCCHHHHHHHH Q ss_conf 972685346887---984230121699999998288677785574213888606866--554345654558988899999 Q gi|254780823|r 916 TDYKTGDNPKKE---TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF--KIDCITNDKKKYSADELSEKS 990 (1040) Q Consensus 916 vDYKTG~~p~~~---~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 990 (1040) ||||||+.++.. +...++.+||++|++++++. .+..+....|+.+..+. ..............++..+++ T Consensus 157 iDyKTg~~~~~~~~~~~~~~~~~Ql~lY~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (265) T 3h4r_A 157 MDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQ-----FGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEY 231 (265) T ss_dssp EEEEEESCHHHHHHHHHHHTTTHHHHHHHHHHHHH-----HSSCCEEEEEEEESSCBTTBCCEEEEECCHHHHHHHHHHH T ss_pred EEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHH-----CCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHH T ss_conf 89830267776532012337799999999999984-----2999863999998335677622799968999999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 999999999984889885555451015668986544 Q gi|254780823|r 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 (1040) Q Consensus 991 ~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~ 1026 (1040) .+.+..+...+.++..| +......|.||+|+. T Consensus 232 ~~~~~~~~~~~~~~~~~----~~~~~~~C~~C~~k~ 263 (265) T 3h4r_A 232 HRNLRTLSDCLNTDEWP----AIKTLSLPRWAKEYA 263 (265) T ss_dssp HHHHHHHHHHHHTCCCC----CCCCCCCCTTCTTCC T ss_pred HHHHHHHHHHHHCCCCC----CCCCCCCCCCCCCCC T ss_conf 99999999999669799----986467884511000 No 2 >>3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale} (A:) Probab=99.90 E-value=5.2e-24 Score=173.50 Aligned_cols=220 Identities=11% Similarity=-0.043 Sum_probs=135.6 Q ss_pred CCCCCCCCCHHHHHHC------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 1246778004577642------8368889763288888721248998899899999999998612589834789999999 Q gi|254780823|r 765 AQPRTYSFSEIKQLIN------DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 (1040) Q Consensus 765 ~~~~~lS~S~l~~~~~------cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~ 838 (1040) ..+..+|+|++++|.. ||++|+++++.++++... ++..+||++|++||.++........ T Consensus 14 ~~~~~~S~S~l~~~~~~~~~~~cp~~~~~~~~~~~~~~~~-----~a~~~Gt~iH~~le~~~~~~~~~~~---------- 78 (266) T 3l0a_A 14 ANKEYXSVSGYKDFAGTYGKXPCEFYGXEKLNGRWEDEKS-----TALLVGSYVDSYFEGSLDQFKKDNP---------- 78 (266) T ss_dssp HHHHCEEHHHHHHHHCBTTBCCCHHHHHHHHHTSCCCCCC-----HHHHHHHHHHHHHHTCHHHHHHHCG---------- T ss_pred CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHCC---------- T ss_conf 6786547868999844951000779999986176788898-----7899978999998727676544173---------- Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEC Q ss_conf 99996532798669999999999999999999973246885999996568897882379999997888879985899972 Q gi|254780823|r 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 (1040) Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDY 918 (1040) ... ........++..+.+++..+...+... .+.....|..+.+.++ ++.++|+||||| +.+.|||| T Consensus 79 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~~~~--g~~l~GriD~id----~~~~IiDy 144 (266) T 3l0a_A 79 -----EIF-TQKGELKANFKQAEEIIARIERDEYFX--KYXSGQKQVIXTGELF--GAKWKIKXDSYI----PGVAIVDL 144 (266) T ss_dssp -----GGB-CTTSSBCHHHHHHHHHHHHHHTCHHHH--HHTTSEEEEEEEEEET--TEEEEEEEEEEE----TTTEEEEE T ss_pred -----CCC-CCCCHHHHHHHHHHHHHHHHHHCCHHH--HHCCCCEEEEEEEEEC--CEEEEEEEEEEE----CCCEEEEE T ss_conf -----100-212056899999999999999570456--6435763789999876--937651467993----68759995 Q ss_pred CCCCCCCHHH-----------HHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH Q ss_conf 6853468879-----------84230121699999998288677785574213888606866554345654558988899 Q gi|254780823|r 919 KTGDNPKKET-----------AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 (1040) Q Consensus 919 KTG~~p~~~~-----------~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~ 987 (1040) |||+.++.++ ...++..||++|++++++. .+..+ ...++.+..+........... ++.+ T Consensus 145 KT~~~~~~~~~~~~~~~~~~~~~~~y~~Ql~~Y~~~~~~~-----~~~~~-~~~~i~~~~~~~~~~~~~~~~----~~~i 214 (266) T 3l0a_A 145 KVXASITDLKWVKDIGYLDFVRYWGYDIQGAVYQEIVRQN-----TGEKL-PFFIAGATKQTEPDIRIIHVT----DNYL 214 (266) T ss_dssp EEESCSSCCEEETTTEEECHHHHTTHHHHHHHHHHHHHHH-----HSCCC-CEEEEEEECSSSCCEEEEEEC----HHHH T ss_pred EECCCCCHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-----HCCCC-CEEEEEEECCCCCCEEEEECC----HHHH T ss_conf 4336565221244112355788608399999999999998-----68987-359999977898732388479----8999 Q ss_pred HHHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 99999999999998---488988555545101566898654420 Q gi|254780823|r 988 EKSLKNLIEIVTLL---QNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040) Q Consensus 988 ~~~~~~l~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040) +...+.+..++..+ .++. |.++ + ...|.||+|..+| T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~--~~p~--~-~~~C~~C~~~~~c 253 (266) T 3l0a_A 215 QEALHXVEXNXPRILRVKNGE--VEPD--R-CELCDCCRHNRVL 253 (266) T ss_dssp HHHHHHHHHHHHHHHHHHTTS--SCCC--C-CSCSHHHHHHCCC T ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCC--C-CCCCCCCCCCCHH T ss_conf 999999999999999997598--4799--9-9979886101101 No 3 >>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:444-587,B:727-885) Probab=99.31 E-value=1.6e-11 Score=91.62 Aligned_cols=98 Identities=12% Similarity=-0.084 Sum_probs=70.0 Q ss_pred CCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCH-------HHHHHHHHHHHHHHHCCC-EE Q ss_conf 7379803433356658637852863113456666676489678856489996-------678889999999985598-59 Q gi|254780823|r 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-------EKYIGQAAHDFEMANGTR-HL 697 (1040) Q Consensus 626 ~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~-------e~~~~~~~~~~~~~~~a~-~v 697 (1040) +.|+|||+|.+||++|++|||+|++++.||...................... +......+.+|..+++|+ ++ T Consensus 152 ~~V~i~Tih~sKGLef~vV~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~rllYVA~TRA~~~L 231 (303) T 1w36_B 152 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 231 (303) T ss_dssp GSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEE T ss_pred CEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 60578743553577632899805767787555665533343211576547577767778887889889998430555659 Q ss_pred EEEEECCC--CCCCCCCCHHHHHHHHCC Q ss_conf 99920467--776656653788877314 Q gi|254780823|r 698 IYTRSLRE--NNIPTIASRWLQRLLVLG 723 (1040) Q Consensus 698 ~lt~~~~~--~~~~~~ps~~l~~l~~~~ 723 (1040) +++++... ++.+..||+++.++.... T Consensus 232 ~l~~~~~~~~~~~~~~ps~~l~~l~~~~ 259 (303) T 1w36_B 232 SLGVAPLVRRRGDKKGDTDVHQSALGRL 259 (303) T ss_dssp EEEECCCCCSCSCCSSCCGGGGSHHHHH T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHH T ss_conf 9986011123577666537778777988 No 4 >>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:371-446,C:653-739,C:781-807) Probab=99.28 E-value=1.1e-10 Score=86.11 Aligned_cols=98 Identities=15% Similarity=0.079 Sum_probs=75.6 Q ss_pred CCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEE Q ss_conf 877379803433356658637852863113456666676489678856489996678889999999985598-5999920 Q gi|254780823|r 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRS 702 (1040) Q Consensus 624 ~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~ 702 (1040) ..++|+|++++.+||++|++|+++|+|+|.||.....+.+.....+...+.... .....+.+|..+++|+ ++++||+ T Consensus 79 ~~~~V~i~tih~~KglefkvV~ilGlneg~~P~~~~~~~~~~~~~~~~~~d~~~--~~eer~LfyvAltrAr~~L~iSy~ 156 (190) T 1w36_C 79 LAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSR--RDDDRYLFLEALISAQQKLYISYI 156 (190) T ss_dssp TSSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCH--HHHHHHHHHHHHHHEEEEEEEEEE T ss_pred CCCCEEEECCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHEEEEC T ss_conf 999379950456468886779995057565566677643110331112379622--289999999999961320043220 Q ss_pred CCC--CCCCCCCCHHHHHHHHCC Q ss_conf 467--776656653788877314 Q gi|254780823|r 703 LRE--NNIPTIASRWLQRLLVLG 723 (1040) Q Consensus 703 ~~~--~~~~~~ps~~l~~l~~~~ 723 (1040) ..+ ++.+..||.++.++.... T Consensus 157 ~~~~~~g~~~~pS~~i~eL~~~~ 179 (190) T 1w36_C 157 GRSIQDNTCLHTRMPFDPQNYQP 179 (190) T ss_dssp CBCSSSCCCBCCSSTTSGGGSSS T ss_pred CCCCCCCHCCCCCCCCCCHHCCC T ss_conf 21178980237777566000244 No 5 >>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:278-376,A:544-673) Probab=99.20 E-value=1e-09 Score=79.69 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=115.4 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHH Q ss_conf 337815995599899999999999998642---29849998026411357888435513777665690035288989999 Q gi|254780823|r 355 CFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 (1040) Q Consensus 355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~---~~~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~ 431 (1040) ....+.++.+.+..+|+..|+..|.+.+.. .+.+|||++++......+..+|.+.|||+.+.+|..-. T Consensus 31 ~g~~i~~~~~~~~~~E~~~Ia~~i~~l~~~~g~~~~dIAIL~r~~~~~~~l~~~L~~~gIP~~i~g~~~~~--------- 101 (229) T 1uaa_A 31 YGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSES--------- 101 (229) T ss_dssp CCCCBEEEECSSHHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGGTTHHHHHHHTTCCEEESCCCC----------- T ss_pred CCCCEEECCCCCCCCCCCEEEECCCCHHCCCCCCHHHCEEHHHCHHHHHHHHHHHHHCCCCEEEECCCCCC--------- T ss_conf 44310001233222212100001110000247870010010201011899999999779988995896455--------- Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHC Q ss_conf 99999837999789999862965456679389999999732232104557778111788875220114444345520101 Q gi|254780823|r 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 (1040) Q Consensus 432 ~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 511 (1040) T Consensus 102 -------------------------------------------------------------------------------- 101 (229) T 1uaa_A 102 -------------------------------------------------------------------------------- 101 (229) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 55343257999999989999998750110022102378899999999999723676321114566577799999999866 Q gi|254780823|r 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 (1040) Q Consensus 512 ~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 591 (1040) T Consensus 102 -------------------------------------------------------------------------------- 101 (229) T 1uaa_A 102 -------------------------------------------------------------------------------- 101 (229) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 42137664477889999998622443356677877379803433356658637852863113456666676489678856 Q gi|254780823|r 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 (1040) Q Consensus 592 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~ 671 (1040) ....++|+|||+|.++|++|++||++|++++.+|.....+..... T Consensus 102 ------------------------------~~~~~~V~i~TiH~aKGLEf~~V~i~~~~~~~~p~~~~~~~~~~~----- 146 (229) T 1uaa_A 102 ------------------------------EEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNID----- 146 (229) T ss_dssp ------------------------------CCCCCSEEEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCH----- T ss_pred ------------------------------CCCCCEEEEEEHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHH----- T ss_conf ------------------------------566996999777442213689899977807989774458942088----- Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEECCCC----CCCCCCCHHHHHHHHC Q ss_conf 4899966788899999999855985-9999204677----7665665378887731 Q gi|254780823|r 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN----NIPTIASRWLQRLLVL 722 (1040) Q Consensus 672 l~l~~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~~----~~~~~ps~~l~~l~~~ 722 (1040) ...+.+|..+++|++ ++++++.... .....+|+|+.++... T Consensus 147 ----------ee~rl~yVa~TRA~~~L~l~~~~~~~~~~~~~~~~~s~~l~el~~~ 192 (229) T 1uaa_A 147 ----------EERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQD 192 (229) T ss_dssp ----------HHHHHHHHHHHTEEEEEEEEECSSCCGGGSCCCCCBCHHHHHSCTT T ss_pred ----------HHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHCCHH T ss_conf ----------9998899569667538899995425546776678998336553887 No 6 >>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:886-964,B:1014-1180) Probab=99.14 E-value=7e-11 Score=87.34 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=53.0 Q ss_pred ECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCH-----------HHHHCCCCCCHHHHHHHHHHCCCCCCCC----C Q ss_conf 788237999999788887998589997268534688-----------7984230121699999998288677785----5 Q gi|254780823|r 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-----------ETAQKLIDPQLSLEAAALKAGSFSQIDC----R 955 (1040) Q Consensus 891 i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~-----------~~~~~~~~~QL~lY~~~~~~~~~~~~~~----~ 955 (1040) +...++.|+|+||||+..+ |+++|||||||+.+.. +....+|.+||.+|+.++++--...+.. . T Consensus 121 ~~~~~~~i~G~IDlv~~~d-d~~~IIDYKT~~~~~~~~~~~~~al~~~~~~~~Y~~QL~lYa~AL~~~~~~~V~~~ly~l 199 (246) T 1w36_B 121 FMQVRGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEH 199 (246) T ss_dssp SCCCEEEEEEEEEEEEBSS-SCBCCEEEECCCCCSSGGGSBHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHSSSCCHHH T ss_pred CCCCEEEEEEEEEEEEEEC-CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH T ss_conf 4454026999999999999-999999717899899830028999999998786399999999999999707267986665 Q ss_pred CCCCEEEEEECC Q ss_conf 742138886068 Q gi|254780823|r 956 KVANLFYIRLKQ 967 (1040) Q Consensus 956 ~~~~~~y~~l~~ 967 (1040) ..++..|+.+++ T Consensus 200 ~~G~vi~iflrg 211 (246) T 1w36_B 200 HFGGVIYLFLRG 211 (246) T ss_dssp HCCCCEEEESSS T ss_pred HCCCEEEEEECC T ss_conf 078179999579 No 7 >>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:287-385,A:549-724) Probab=99.13 E-value=2e-09 Score=77.78 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=116.6 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHH Q ss_conf 3378159955998999999999999986422---9849998026411357888435513777665690035288989999 Q gi|254780823|r 355 CFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 (1040) Q Consensus 355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~---~~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~ 431 (1040) ....+.++.+.+..+|+..|+..|.+.+... +.+|||++++......+..+|...|||+.+.++..... T Consensus 31 ~~~~~~~~~~~~~~~ea~~i~~~i~~l~~~~g~~~~diAIL~r~~~~~~~~~~~l~~~gIP~~~~g~~~~~~-------- 102 (275) T 1pjr_A 31 EGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKGTE-------- 102 (275) T ss_dssp CCCCEEEEEEEEHHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEEETSCC----------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHCC-------- T ss_conf 798417995276678999999999999983898866514995154769999999998799899968965013-------- Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHC Q ss_conf 99999837999789999862965456679389999999732232104557778111788875220114444345520101 Q gi|254780823|r 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 (1040) Q Consensus 432 ~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 511 (1040) T Consensus 103 -------------------------------------------------------------------------------- 102 (275) T 1pjr_A 103 -------------------------------------------------------------------------------- 102 (275) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 55343257999999989999998750110022102378899999999999723676321114566577799999999866 Q gi|254780823|r 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 (1040) Q Consensus 512 ~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 591 (1040) T Consensus 103 -------------------------------------------------------------------------------- 102 (275) T 1pjr_A 103 -------------------------------------------------------------------------------- 102 (275) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 42137664477889999998622443356677877379803433356658637852863113456666676489678856 Q gi|254780823|r 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 (1040) Q Consensus 592 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~ 671 (1040) .....++|+|||+|.++|++|++||+++++++.+|....... T Consensus 103 -----------------------------~~~~~~~V~i~TiH~aKGlE~~~V~i~~~~~~~~p~~~~~~~--------- 144 (275) T 1pjr_A 103 -----------------------------QAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLED--------- 144 (275) T ss_dssp ---------------------------------CCCEEEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTC--------- T ss_pred -----------------------------CCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCC--------- T ss_conf -----------------------------455678448974220577777879982786678864001477--------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEECCC----CCCCCCCCHHHHHHHHC Q ss_conf 4899966788899999999855985-999920467----77665665378887731 Q gi|254780823|r 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVL 722 (1040) Q Consensus 672 l~l~~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~----~~~~~~ps~~l~~l~~~ 722 (1040) .+......+.+|+.+++|++ ++++++... ......+|+++..+... T Consensus 145 -----~~~~~ee~RllyVA~TRAr~~L~l~~~~~~~~~~~~~~~~~s~~~~~~~~~ 195 (275) T 1pjr_A 145 -----DDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAH 195 (275) T ss_dssp -----HHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEETTEEECCCBCHHHHHSCGG T ss_pred -----CHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHH T ss_conf -----244799999999888378577899980603457887758998717761599 No 8 >>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:284-381,A:547-680) Probab=98.85 E-value=5.1e-08 Score=68.60 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=56.0 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC Q ss_conf 33781599559989999999999999864229--84999802641135788843551377766569 Q gi|254780823|r 355 CFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAG 418 (1040) Q Consensus 355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~~--~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g 418 (1040) ....+.++.+.+..+|+..|+..|.+.+..+. .+|||++|+......+...|.+.|||+.+.++ T Consensus 31 ~g~~~~~~~~~~~~~E~~~i~~~I~~~~~~g~~~~dIAIL~r~~~~~~~l~~~L~~~gIP~~~~~~ 96 (232) T 2is6_A 31 DGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGG 96 (232) T ss_dssp CCSCEEEEEEEEHHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEECSS T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECC T ss_conf 899617995476788899999999878751987321246641524189999999977998898589 No 9 >>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:1-102,A:185-277) Probab=98.27 E-value=5.7e-05 Score=48.59 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=94.4 Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHH Q ss_conf 88489838988937999999971121011236789813322206762796899999999985118886514033125776 Q gi|254780823|r 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 (1040) Q Consensus 5 ~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~ 84 (1040) ++-+..-|||.. ++.+-...-..+..... ..-.+++|++||+.++..+++.+.+..+....-.+.+.|++++ T Consensus 16 ~~~lV~g~~GsG--KT~~~~~~~~~ll~~~~------~~~~~il~v~~t~~a~~~~~~~i~~~~~~~~~~~~~~~t~~~~ 87 (195) T 1uaa_A 16 GPCLVLAGAGSG--KTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTL 87 (195) T ss_dssp SEEEECCCTTSC--HHHHHHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHHHH T ss_pred CCEEEEEECCHH--HHHHHHHHHHHHHHHCC------CCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHH T ss_conf 898999808447--99999999999998089------8960499875539999999999998728422378789609999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 56554045433467788888189999999999999863100000012232111356978899989999999999997599 Q gi|254780823|r 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 (1040) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~ 164 (1040) ....... ...... ..+++.. T Consensus 88 ~~~~~~~---------------------------~~~~~~---------------------------~~d~~~~------ 107 (195) T 1uaa_A 88 GLDIIKR---------------------------EYAALG---------------------------MKDLILL------ 107 (195) T ss_dssp HHHHHHH---------------------------HHHHTT---------------------------CCHHHHH------ T ss_pred HHHHHHH---------------------------HHHHHC---------------------------CCHHHHH------ T ss_conf 9999999---------------------------899828---------------------------9988887------ Q ss_pred CHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH Q ss_conf 97898740022020799999999999999999975324888989999999987443442276880999834566167999 Q gi|254780823|r 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 (1040) Q Consensus 165 ~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ 244 (1040) ....+.. ..........++++|+||++||+++.+.. T Consensus 108 ------------------------------a~~~l~~--------------~~~~~~~~~~~~~~i~iDE~QD~~~~~~~ 143 (195) T 1uaa_A 108 ------------------------------PTLLLQA--------------NEEVRKRWQNKIRYLLVDEYQDTNTSQYE 143 (195) T ss_dssp ------------------------------HHHHHHH--------------CHHHHHHHHTTCSEEEESCGGGCBHHHHH T ss_pred ------------------------------HHHHHHC--------------CHHHHHHHHHHHHHCCCHHHCCCCCHHHH T ss_conf ------------------------------7776511--------------81888998864100010110012304442 Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC Q ss_conf 99998614896899824863210788864334201 Q gi|254780823|r 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 (1040) Q Consensus 245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 279 (1040) ++..+.+. +..++..+|+++..+.|+++.+... T Consensus 144 ~l~~l~~~--~~~~~~vGD~~Q~i~~~~~a~~~~~ 176 (195) T 1uaa_A 144 LVKLLVGS--RARFTVVGDDDQSIYSWRGARPQNL 176 (195) T ss_dssp HHHHHHTT--TCCEEEECCGGGCCCGGGTBCTTHH T ss_pred HCCCCCCC--CCEEEEECCCHHHHHHHHCCCCCCC T ss_conf 00001466--5413320331011100100254322 No 10 >>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:1-82,C:185-330) Probab=98.23 E-value=3.5e-05 Score=49.98 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=42.1 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH Q ss_conf 8809998345661679999999861489689982486321078886 Q gi|254780823|r 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272 (1040) Q Consensus 227 ~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~ 272 (1040) +.+|+|+|.+.++|.+..+|+++++.++.+.++.++|..+|.+... T Consensus 106 P~Ri~vFGis~Lpp~~l~~L~aLs~~~dV~l~~lnPc~~yW~Di~~ 151 (228) T 1w36_C 106 PSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKD 151 (228) T ss_dssp CSEEEEESCCCCCHHHHHHHHHHTTTSEEEEEEECSCSSCCSCCCC T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCC T ss_conf 8768983356489999999999862698589606868778864058 No 11 >>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:1-148,B:349-443) Probab=98.20 E-value=2e-05 Score=51.61 Aligned_cols=58 Identities=10% Similarity=-0.022 Sum_probs=50.2 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 2768809998345661679999999861489689982486321078886433420123 Q gi|254780823|r 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 (1040) Q Consensus 224 ~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 281 (1040) ..++++|+||++||+++.+..+++.+.....+..++..+|+++..+.|+++.+..... T Consensus 175 ~~~~~~i~iDE~QD~~~~~~~~~~~l~~~~~~~~~~~~GD~~Q~Iy~frga~~~~~~~ 232 (243) T 1w36_B 175 RTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMK 232 (243) T ss_dssp HHHCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGCCCGGGTCCHHHHHH T ss_pred HHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHH T ss_conf 8640758854476635508999999980678872798437772011002321688999 No 12 >>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:1-106,A:189-283) Probab=98.16 E-value=7.2e-05 Score=47.92 Aligned_cols=160 Identities=12% Similarity=0.068 Sum_probs=95.6 Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHH Q ss_conf 88489838988937999999971121011236789813322206762796899999999985118886514033125776 Q gi|254780823|r 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 (1040) Q Consensus 5 ~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~ 84 (1040) .+-+..-+||.. ++.+-......+... .+.+| .+++|++||+.++..+++.+....+. ..-...+.|++++ T Consensus 23 ~~~lV~g~aGsG--KT~~~~~~i~~ll~~---~~~~~---~~il~~t~t~~a~~~l~~~l~~~~~~-~~~~~~v~t~h~~ 93 (201) T 2is6_A 23 SNLLVLAGAGSG--KTRVLVHRIAWLMSV---ENCSP---YSIMAVTFTNKAAAEMRHRIGQLMGT-SQGGMWVGTFHGL 93 (201) T ss_dssp SCEEEECCTTSS--HHHHHHHHHHHHHHT---SCCCG---GGEEEEESSHHHHHHHHHHHHHHHCS-CCTTCEEEEHHHH T ss_pred CCEEEEEECCHH--HHHHHHHHHHHHHHH---CCCCC---CCEEEEECCHHHHHHHHHHHHHHCCC-CCCCEEEEEHHHH T ss_conf 998999828659--999999999999981---99993---40999814099999999999986277-7688399749999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 56554045433467788888189999999999999863100000012232111356978899989999999999997599 Q gi|254780823|r 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 (1040) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~ 164 (1040) ............ .+ .+++... T Consensus 94 ~~~~l~~~~~~~--------------------------------------------------~~----~d~~~~a----- 114 (201) T 2is6_A 94 AHRLLRAHHMDA--------------------------------------------------NF----AELLLRA----- 114 (201) T ss_dssp HHHHHHHTTTTT--------------------------------------------------TH----HHHHHHH----- T ss_pred HHHHHHHHHHHH--------------------------------------------------CC----CHHHHHH----- T ss_conf 999999969980--------------------------------------------------91----0113689----- Q ss_pred CHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH Q ss_conf 97898740022020799999999999999999975324888989999999987443442276880999834566167999 Q gi|254780823|r 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 (1040) Q Consensus 165 ~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ 244 (1040) . ..+.. ++ ........++..|+||++||+++.+.. T Consensus 115 ------------------------------~-~~l~~----~~----------~~~~~~~~~~~~i~iDE~QD~~~~~~~ 149 (201) T 2is6_A 115 ------------------------------H-ELWLN----KP----------HILQHYRERFTNILVDEFQDTNNIQYA 149 (201) T ss_dssp ------------------------------H-HHHHH----CH----------HHHHHHHHHCCEEEESSGGGCCHHHHH T ss_pred ------------------------------H-HHHHH----HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ------------------------------9-99876----19----------999999887766666653000022354 Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC Q ss_conf 99998614896899824863210788864334201 Q gi|254780823|r 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 (1040) Q Consensus 245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 279 (1040) ++..+.. .+..++..+|+++.++.|+++.+... T Consensus 150 ll~~l~~--~~~~~~~vGD~~QsIy~f~ga~~~~~ 182 (201) T 2is6_A 150 WIRLLAG--DTGKVMIVGDDDQSIYGWRGAQVENI 182 (201) T ss_dssp HHHHHHT--TTCEEEEEECGGGCCCGGGTCCTHHH T ss_pred HHHHCCC--CCCEEEEEECCCCHHCCCCCHHHHHH T ss_conf 4442036--65168985136301011244066899 No 13 >>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:808-1035) Probab=97.71 E-value=0.0028 Score=37.51 Aligned_cols=201 Identities=11% Similarity=0.186 Sum_probs=108.9 Q ss_pred CCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 0012467780045776428368889763288888721-------248998899899999999998612589834789999 Q gi|254780823|r 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF-------KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 (1040) Q Consensus 763 ~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~-------~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l 835 (1040) +...+..+|.+.+..|.++|.++|+++.|++...... ...+++.++=.+--.+|+... .+.+.++....+ T Consensus 18 p~~~~~~i~L~~L~rF~~~P~~~fl~~rL~i~~~~~~~~~~d~Epf~ld~L~~y~L~~~ll~~~l---~~~~~~~~~~~l 94 (228) T 1w36_C 18 PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV---EQDDAERLFRRF 94 (228) T ss_dssp CCCCCSCEEHHHHHHHSSSHHHHHHHTTTCCCCCCSCCCCCSSCCSSCCHHHHHHHHHHHHHHHH---TTCCHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HCCCHHHHHHHH T ss_conf 98766667999999999897999999744888876555556667555660755259999999987---189989999999 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEE Q ss_conf 99999996532798669999999999999999999973246885999996568897882379999997888879985899 Q gi|254780823|r 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 (1040) Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~I 915 (1040) .. ....+....-..++.....-+..+............ +..+.+.++ +++|.|+++.+ ..+| + T Consensus 95 ~~------~G~LP~g~~G~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~l~~~--~~~L~G~l~~~--~~~~---l 157 (228) T 1w36_C 95 RA------AGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ----SMEIDLACN--GVQITGWLPQV--QPDG---L 157 (228) T ss_dssp HH------HTCSCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCE----EEEEEEEET--TEEEEEEEEEE--CSSE---E T ss_pred HH------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CEEEEEEEC--CEEEEEEECCC--CCCC---E T ss_conf 86------799998634499999999999999999997068888----612898668--98999988886--3783---5 Q ss_pred EECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 97268534688798423012169999999828867778557421388860686655434565455898889999999999 Q gi|254780823|r 916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 (1040) Q Consensus 916 vDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 995 (1040) |-|++|+...+ +. ....++-+++...+ .......++.-++.....+. + .++....|. T Consensus 158 v~~~~~~l~~~-~~-----l~~Wl~hL~~~a~~------~~~~~~~~~~~d~~~~~~p~-------~----~~~A~~~L~ 214 (228) T 1w36_C 158 LRWRPSLLSVA-QG-----MQLWLEHLVYCASG------GNGESRLFLRKDGEWRFPPL-------A----AEQALHYLS 214 (228) T ss_dssp EEECSSCCCHH-HH-----HHHHHHHHHHHHTS------CCCEEEEECGGGCEEEECCC-------C----HHHHHHHHH T ss_pred EEEEECCCCHH-HH-----HHHHHHHHHHHHCC------CCCCEEEEEECCCEEEECCC-------C----HHHHHHHHH T ss_conf 99973889877-89-----99999999998269------99972899975845898898-------9----899999999 Q ss_pred HHHHHHHCCCC Q ss_conf 99999848898 Q gi|254780823|r 996 EIVTLLQNGEQ 1006 (1040) Q Consensus 996 ~~~~~~~~~~~ 1006 (1040) .++.-|..|.. T Consensus 215 ~ll~~~~~G~~ 225 (228) T 1w36_C 215 QLIEGYREGMS 225 (228) T ss_dssp HHHHHHHHTTT T ss_pred HHHHHHHHHHC T ss_conf 99999999845 No 14 >>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:1-107,A:194-286) Probab=97.55 E-value=0.0026 Score=37.68 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=91.9 Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHH Q ss_conf 88489838988937999999971121011236789813322206762796899999999985118886514033125776 Q gi|254780823|r 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 (1040) Q Consensus 5 ~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~ 84 (1040) +.-+..-|+|.. ++..-.......... .+.. ..++++++||+.++..+++.+....+ ....-+.+.|++++ T Consensus 25 ~~~~V~~~tGsG--KT~~~~~~i~~~l~~---~~~~---~~~il~i~~t~~~~~~l~~~~~~~~~-~~~~~~~v~t~~~~ 95 (200) T 1pjr_A 25 GPLLIMAGAGSG--KTRVLTHRIAYLMAE---KHVA---PWNILAITFTNKAAREMRERVQSLLG-GAAEDVWISTFHSM 95 (200) T ss_dssp SCEEEEECTTSC--HHHHHHHHHHHHHHT---TCCC---GGGEEEEESSHHHHHHHHHHHHHHHG-GGGTTSEEEEHHHH T ss_pred CCEEEEEECCHH--HHHHHHHHHHHHHHC---CCCC---CCCEEEEECHHHHHHHHHHHHHHHHC-CCCCCCEEEEHHHH T ss_conf 898999838427--999999999999980---9989---42299993519999999999998604-43578599749999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 56554045433467788888189999999999999863100000012232111356978899989999999999997599 Q gi|254780823|r 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 (1040) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~ 164 (1040) ......... . ..+..... T Consensus 96 ~~~~~~~~~---------------------------~------------------------------~~d~~~~~----- 113 (200) T 1pjr_A 96 CVRILRRDI---------------------------D------------------------------RIDLIMTT----- 113 (200) T ss_dssp HHHHHHHHG---------------------------G------------------------------GGHHHHHH----- T ss_pred HHHHHHHHH---------------------------H------------------------------HHHHHHHH----- T ss_conf 999999979---------------------------9------------------------------85899999----- Q ss_pred CHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH Q ss_conf 97898740022020799999999999999999975324888989999999987443442276880999834566167999 Q gi|254780823|r 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 (1040) Q Consensus 165 ~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ 244 (1040) ++.+... + ........+++.|+||++|++++.+.. T Consensus 114 ---------------------------~~~~~~~--------~----------~~~~~~~~~~~~i~vDEaQd~~~~~~~ 148 (200) T 1pjr_A 114 ---------------------------IQLFDRV--------P----------DVLHYYQYKFQYIHIDEYQDTNRAQYT 148 (200) T ss_dssp ---------------------------HHHHHHC--------H----------HHHHHHHHHCSEEEESSGGGCCHHHHH T ss_pred ---------------------------HHHHCCC--------H----------HHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf ---------------------------9885049--------9----------999999864230131112421378999 Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC Q ss_conf 99998614896899824863210788864334201 Q gi|254780823|r 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 (1040) Q Consensus 245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 279 (1040) ++..+.+. +..++..+|++|..+.|+++..... T Consensus 149 ~l~~~~~~--~~~~~~~GD~~Q~i~~f~ga~~~~~ 181 (200) T 1pjr_A 149 LVKKLAER--FQNICAVGDADQSIYRWRGADIQNI 181 (200) T ss_dssp HHHHHHTT--TCCEEEEECGGGCCCGGGTCCTHHH T ss_pred HHHHHHCC--CCEEEEEECCCCCCCCCCCCCHHHH T ss_conf 99987267--7628998157411245689888999 No 15 >>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, structural genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum} (A:) Probab=97.25 E-value=0.00053 Score=42.21 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=49.9 Q ss_pred CCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEE Q ss_conf 6677877379803433356658637852863113456666676489678856489996678889999999985598-599 Q gi|254780823|r 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLI 698 (1040) Q Consensus 620 ~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~ 698 (1040) ......+.|.++|+|.++|++|++||++|++++..|.... .+.+|..+++|+ +++ T Consensus 94 ~~~~~~~~v~v~Tih~aKGlE~~~Vil~~~~~~~~~~~~e------------------------rrllYVAiTRAk~~L~ 149 (174) T 3dmn_A 94 ENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENYQREDE------------------------RQLLYTICSRAXHELT 149 (174) T ss_dssp CC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTTSCSGGG------------------------HHHHHHHHTTEEEEEE T ss_pred CCCCCCCCEEEEEHHHHHCCCCCEEEEEECCCCCCCCHHH------------------------HHHHHHHHHHHHCEEE T ss_conf 2335689779984545222678989998245432045888------------------------8789999876434799 Q ss_pred EEEECCCCCCCCCCCHHHHHHH Q ss_conf 9920467776656653788877 Q gi|254780823|r 699 YTRSLRENNIPTIASRWLQRLL 720 (1040) Q Consensus 699 lt~~~~~~~~~~~ps~~l~~l~ 720 (1040) ++++. .+|+++..+. T Consensus 150 i~~~~-------~~s~~l~~i~ 164 (174) T 3dmn_A 150 LVAVG-------SLSPLLARVN 164 (174) T ss_dssp EEEES-------SBCGGGTTSC T ss_pred EEECC-------CCCHHHHHCC T ss_conf 99899-------9699998389 No 16 >>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:377-543) Probab=96.05 E-value=0.016 Score=32.51 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=41.4 Q ss_pred HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 352889899999999983799978999986296545667938999999 Q gi|254780823|r 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 (1040) Q Consensus 421 L~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~ 468 (1040) +.+++.|++++++|+++.+|.|..+++++|++|.++++..+....... T Consensus 1 Fyer~eI~dila~Lr~i~np~D~~al~ril~~P~~gi~~~~l~~i~~~ 48 (167) T 1uaa_A 1 FFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEW 48 (167) T ss_dssp GGGCHHHHHHHHHHHHHHCTTCHHHHHHHSSTTCCCCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHH T ss_conf 003599999999999981988669999998360220113567777765 No 17 >>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:382-524) Probab=96.05 E-value=0.017 Score=32.29 Aligned_cols=47 Identities=21% Similarity=0.123 Sum_probs=40.8 Q ss_pred HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 35288989999999998379997899998629654566793899999 Q gi|254780823|r 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 (1040) Q Consensus 421 L~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~ 467 (1040) +.+++.|++++++++++.+|.|..+++++|++|..+.|......... T Consensus 1 F~er~eVkdila~Lr~i~np~D~~al~ril~~P~~gig~~~l~~i~~ 47 (143) T 2is6_A 1 FFERQEIKDALSYLRLIVNRNDDAAFERVVNTPTRGIGDRTLDVVRQ 47 (143) T ss_dssp GGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCSCCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 11449999999999998198876999999835435899999999999 No 18 >>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:588-726) Probab=95.83 E-value=0.012 Score=33.43 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=39.0 Q ss_pred HHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf 528898999999999837999789999862965456679389999 Q gi|254780823|r 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 (1040) Q Consensus 422 ~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~ 466 (1040) .+++.+++++++|+++.+|.|..++.++|++|+++++...+..+. T Consensus 1 f~r~ei~dlla~Lr~l~~P~d~~al~~~l~sP~~gi~~~~l~~l~ 45 (139) T 1w36_B 1 FETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLN 45 (139) T ss_dssp GGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 046999999999976147433088999983721499999999984 No 19 >>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (D:361-595) Probab=95.58 E-value=0.017 Score=32.32 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=42.6 Q ss_pred CCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEE Q ss_conf 6677877379803433356658637852863113456666676489678856489996678889999999985598-599 Q gi|254780823|r 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLI 698 (1040) Q Consensus 620 ~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~ 698 (1040) ........+.++|+|.++|++||+||+.+.+++..+.. .+.+|+.+++|+ +++ T Consensus 165 ~~~~~~~~v~~~TiH~sqG~E~d~Vii~~~~~~~~~~~--------------------------rrllYVAiTRAk~~L~ 218 (235) T 1w36_D 165 SRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT--------------------------RELVYTAVTRARRRLS 218 (235) T ss_dssp SCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCCSSSC--------------------------HHHHHHHHTTBSSCEE T ss_pred HHCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCHHH--------------------------HHHHHHHHHHHHCCEE T ss_conf 57366018888477202026799799993899983355--------------------------6278789899868859 Q ss_pred EEEEC Q ss_conf 99204 Q gi|254780823|r 699 YTRSL 703 (1040) Q Consensus 699 lt~~~ 703 (1040) ++... T Consensus 219 i~~~~ 223 (235) T 1w36_D 219 LYADE 223 (235) T ss_dssp EECCT T ss_pred EEECH T ss_conf 99859 No 20 >>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} (A:122-251) Probab=95.46 E-value=0.12 Score=26.73 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=47.9 Q ss_pred HHHHHHHHHHHHC-CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHH Q ss_conf 9999999999732-468859999965688978823799999978888799858999726853468879842301216999 Q gi|254780823|r 862 KISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 (1040) Q Consensus 862 ~~~~~~l~~~~~~-~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY 940 (1040) +.++.++....+. ..+++.+..|.. ++ .|+||-+..+++|+++||.+|+|+... ++ --|+.-| T Consensus 7 ~dLe~~i~~n~~~l~~g~~~v~~E~~----~~------~g~IDll~~d~~~~~ViIElK~~~~~~--~~----i~Ql~~Y 70 (130) T 2vld_A 7 AEXANLIFENPRVIEEGFKPIYREKP----IR------HGIVDVXGVDKDGNIVVLELKRRKADL--HA----VSQXKRY 70 (130) T ss_dssp HHHHHHHHHCGGGTCTTCEEEEEEEE----ET------TEEEEEEEECTTSCEEEEEECSSCBCH--HH----HHHHHHH T ss_pred HHHHHHHHHCHHHHCCCCEEEEEEEE----CC------CCCEEEEEEECCCCEEEEEEEECCCCH--HH----HHHHHHH T ss_conf 99999998699986789689999997----18------886689999179999999997047987--48----9999999 Q ss_pred HHHHHHC Q ss_conf 9999828 Q gi|254780823|r 941 AAALKAG 947 (1040) Q Consensus 941 ~~~~~~~ 947 (1040) +-.+... T Consensus 71 ~~~~~~~ 77 (130) T 2vld_A 71 VDSLKEE 77 (130) T ss_dssp HHHHHHH T ss_pred HHHHHHC T ss_conf 9998612 No 21 >>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:386-548) Probab=95.03 E-value=0.042 Score=29.77 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=39.0 Q ss_pred HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHH Q ss_conf 35288989999999998379997899998629654566793899 Q gi|254780823|r 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 (1040) Q Consensus 421 L~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~ 464 (1040) +.+++.|++++++++++.+|.|..+++++|++|..+++...... T Consensus 1 F~er~eVkdila~Lr~~~np~d~~a~~ril~~p~~~i~~~~l~~ 44 (163) T 1pjr_A 1 FYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDK 44 (163) T ss_dssp GGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCTTTSCCCC- T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHH T ss_conf 12579999999999998098976999999836323577566778 No 22 >>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:83-184) Probab=79.71 E-value=2.5 Score=18.09 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=30.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC------HHCCHHHHHHHH Q ss_conf 356978899989999999999997599978987400------220207999999 Q gi|254780823|r 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK------NEKYGMWWLLAA 185 (1040) Q Consensus 138 ~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~------~~~~~~~w~~~~ 185 (1040) ...+..+.+.||+.|+++||++..++. +-|..-. .-.....||..+ T Consensus 35 ~~~~~~k~~qLA~~iAdlFdqYl~yRP--dwl~~We~g~~~~~l~~~~~WQ~~L 86 (102) T 1w36_C 35 DDSDKRKLFQLSSKAADLFDQYLVYRP--DWLAQWETGHLVEGLGEAQAWQAPL 86 (102) T ss_dssp SSCSSHHHHHHHHHHHHHHHHHTTSSH--HHHHHHHTTCCCTTCCTTHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 686301899999999999999984089--9999987699877787245579999 No 23 >>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:345-425,A:493-554) Probab=65.54 E-value=1.9 Score=18.86 Aligned_cols=27 Identities=7% Similarity=-0.170 Sum_probs=23.1 Q ss_pred ECCCCCCCCCCCCEEEECCCCCCCCCC Q ss_conf 803433356658637852863113456 Q gi|254780823|r 630 ILGTLESRLLNFDTLILGGLNEGVWPK 656 (1040) Q Consensus 630 v~~~~~a~~~~~~~v~v~gl~e~~~P~ 656 (1040) ++|+|.++|.+|++||++...+..+.. T Consensus 82 ~~TvHk~QG~E~~~Vil~~~~~~~~~~ 108 (143) T 3e1s_A 82 ALTVHRAQGSEWGTVLGVLHEAHMPML 108 (143) T ss_dssp EEEHHHHTTCCEEEEEEEECGGGGGGC T ss_pred EEEEECCCCCCCCEEEEECCCCCCCCC T ss_conf 816734002676859998788776424 No 24 >>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:103-184) Probab=39.87 E-value=14 Score=13.16 Aligned_cols=52 Identities=12% Similarity=-0.072 Sum_probs=36.6 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 99999999999975999789874002202079999999999999999997532488898 Q gi|254780823|r 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 (1040) Q Consensus 149 A~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~ 207 (1040) +..+...+..+...+++|+....... +.+. ..+..+|+.|..++...|.+|+ T Consensus 30 ~~~~l~~IS~~Kn~~~~p~~~~~~~~----~~~~---~~~~~iy~~Y~~~l~~~n~~DF 81 (82) T 1uaa_A 30 LQQLISTISNWKNDLKTPSQAAASAI----GERD---RIFAHCYGLYDAHLKACNVLDF 81 (82) T ss_dssp HHHHHHHHHHHHTTTCCTTHHHHTCC----SHHH---HHHHHHHHHHHHHHHHHTCEEH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHCCCCH T ss_conf 99999876544220168888765421----0356---7788898888888876321330 No 25 >>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:108-193) Probab=39.30 E-value=15 Score=13.10 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=36.7 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 9999999999975999789874002202079999999999999999997532488898 Q gi|254780823|r 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 (1040) Q Consensus 150 ~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~ 207 (1040) ..+...+.++...++.|++...-.... + ...+..+|+.|...+...|.+|+ T Consensus 35 ~~il~~IS~~Kn~~~~p~~~~~~~~~~----~---~~~~~~iY~~Y~~~l~~~n~lDF 85 (86) T 1pjr_A 35 RTILGTISAAKNELLPPEQFAKRASTY----Y---EKVVSDVYQEYQQRLLRNHSLDF 85 (86) T ss_dssp HHHHHHHHHHHHTTCCHHHHTTC---C----H---HHHHHHHHHHHHHHHHHTTEECT T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHCCCCCH T ss_conf 999999999875158899999750016----9---99999999999999998289985 No 26 >>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide- binding, transferase; HET: MSE; 2.01A {Staphylococcus aureus} (A:1-167) Probab=33.75 E-value=18 Score=12.53 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=39.3 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 768809998345661679999999861489689982486321078886433 Q gi|254780823|r 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 (1040) Q Consensus 225 ~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~ 275 (1040) ...+.|+||+.|-++.-+...++.+++. +..+++.++|.++....|.... T Consensus 100 ~~~dvI~IDEaQF~~~~~ie~i~~l~d~-g~~Vi~agL~~d~~~~~F~~~~ 149 (167) T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSAD-GHRVIVAGLDXDFRGEPFEPXP 149 (167) T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHHT-TCEEEEEEESBCTTSCBCTTHH T ss_pred CCCCEEEEECHHCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCHHH T ss_conf 4799999981450985399999999868-9989999548771648270299 No 27 >>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} (B:241-354) Probab=33.44 E-value=18 Score=12.50 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=13.8 Q ss_pred CCCCCEEEEECCCCCC Q ss_conf 7998589997268534 Q gi|254780823|r 908 LKSGFVDITDYKTGDN 923 (1040) Q Consensus 908 ~~dG~~~IvDYKTG~~ 923 (1040) ..||.++|.|+|||+. T Consensus 19 s~D~ti~iWd~~tg~~ 34 (114) T 2vdu_B 19 GGDDKIFAWDWKTGKN 34 (114) T ss_dssp ESSSEEEEEETTTCCE T ss_pred ECCCCEEEEECCCCCE T ss_conf 5899889998988969 No 28 >>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:107-188,A:525-546) Probab=32.07 E-value=19 Score=12.35 Aligned_cols=53 Identities=6% Similarity=-0.054 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 9999999999975999789874002202079999999999999999997532488898999 Q gi|254780823|r 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210 (1040) Q Consensus 150 ~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~ 210 (1040) ..+...+.++...+++|+.+.... .++ ...+..+|+.|.+.+...|.+|-... T Consensus 34 ~~il~~IS~~Kn~~~~p~~~~~~~----~~~----~~~~a~IY~~Ye~~L~~~n~lD~~~~ 86 (104) T 2is6_A 34 RQAMWYINSQKDEGLRPHHIQSYG----NPV----EQTWQKVYQAYQEACDRAGLVDDEDL 86 (104) T ss_dssp HHHHHHHHHHHHTTCCTTTCCCSS----CHH----HHHHHHHHHHHHHHHHHHTEEEC--C T ss_pred HHHHHHHHHHHHHCCCHHHHHHHC----CHH----HHHHHHHHHHHHHHHHHCCCCCCCHH T ss_conf 999999876554037868888734----789----99999999999999998499431000 No 29 >>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, virginiamycin B hydrolase, streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* (A:182-265) Probab=28.84 E-value=21 Score=12.00 Aligned_cols=23 Identities=9% Similarity=-0.130 Sum_probs=16.8 Q ss_pred EEEEEEECCCCCEEEEECCCCCC Q ss_conf 99788887998589997268534 Q gi|254780823|r 901 FADRIDLLKSGFVDITDYKTGDN 923 (1040) Q Consensus 901 rIDRid~~~dG~~~IvDYKTG~~ 923 (1040) ..+-|..++||.++|.||++++. T Consensus 45 ~P~gia~d~~G~i~v~d~~~~~I 67 (84) T 2z2n_A 45 RPHAITAGAGIDLWFTEWGANKI 67 (84) T ss_dssp CEEEEEECSTTCEEEEETTTTEE T ss_pred CEEEEEECCCCCEEEEEECCCEE T ss_conf 12679999998199998159989 No 30 >>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* (A:1-142) Probab=27.62 E-value=22 Score=11.87 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=38.4 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 768809998345661679999999861489689982486321078886433 Q gi|254780823|r 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 (1040) Q Consensus 225 ~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~ 275 (1040) ...+.|+||+.|-+++.+...+..+++. +-.+++.+.|.+.....|.+.. T Consensus 75 ~~~dvI~IDEaQFf~~~~v~~l~~lad~-g~~Vi~aGL~~df~~~~F~~~~ 124 (142) T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTA 124 (142) T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHH T ss_pred CCCEEEEEEEHHHCCHHHHHHHHHHEEC-CEEEEEEEEEEEECCCCHHHHH T ss_conf 6611999850453115799997771237-8589999975211387377799 No 31 >>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (B:244-395) Probab=27.29 E-value=23 Score=11.83 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCC Q ss_conf 99999999999864229849998026411357888435513777 Q gi|254780823|r 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 (1040) Q Consensus 370 Ea~~ia~~lr~~~~~~~~~~avv~~d~~~~~~v~~~L~~~gipv 413 (1040) +...++..+....+...+.+.++...........+.|...|||+ T Consensus 89 ~~~~~~~~i~~~~~~~~kp~v~~~~~g~~~~~~~~~l~~~gipv 132 (152) T 2fp4_B 89 CAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPI 132 (152) T ss_dssp HHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCC T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCE T ss_conf 69999999999995299975899999898899999999779974 No 32 >>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis} (A:72-167,A:336-394) Probab=26.84 E-value=23 Score=11.78 Aligned_cols=53 Identities=28% Similarity=0.428 Sum_probs=39.3 Q ss_pred ECCCCEEEEEEEEEE---EECCCC-CEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHH Q ss_conf 788237999999788---887998-58999726853468879842301216999999982 Q gi|254780823|r 891 IESIGIHLTGFADRI---DLLKSG-FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 (1040) Q Consensus 891 i~~~~~~l~GrIDRi---d~~~dG-~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~ 946 (1040) +.++.|.|+|=.||- -.+..| ..+..|+--+..|+=+.+-.| |+-||-.+-.. T Consensus 12 L~dRRVEITGP~drkm~inALNSgA~~~maDFEDa~sPtW~N~i~G---q~NL~dAv~~~ 68 (155) T 3cux_A 12 LEDRRVEITGPVDRKMVINALNSGAHLFMADFEDSNSPTWENAIEG---QINLRDAVKGT 68 (155) T ss_dssp GSCCSEEEEEESCHHHHHHHHTSSCSEEEEESSTTSCCCHHHHHHH---HHHHHHHHHTC T ss_pred HHCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHH---HHHHHHHHHCC T ss_conf 6006134657999899998761699789853455789985779999---99999998476 No 33 >>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* (A:1-167) Probab=26.14 E-value=24 Score=11.69 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=39.8 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 768809998345661679999999861489689982486321078886433 Q gi|254780823|r 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 (1040) Q Consensus 225 ~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~ 275 (1040) ...+.|+||+.|-++..+...++.+... +..+++.+.|.++-...|.... T Consensus 100 ~~~dvi~IDEaQFl~~~~ie~~~~l~~~-~~~Vi~agL~~d~~~~~F~~~~ 149 (167) T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVP 149 (167) T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHH T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEEEEEECCCCHHHHH T ss_conf 4200999834111422489999999844-7744899777204387567699 No 34 >>1xx6_A Thymidine kinase; X-RAY, NESG, northeast structural genomics consortium, protein structure initiative, PSI; HET: ADP; 2.00A {Clostridium acetobutylicum atcc 824} (A:1-147) Probab=21.56 E-value=29 Score=11.13 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=38.9 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 768809998345661679999999861489689982486321078886433 Q gi|254780823|r 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 (1040) Q Consensus 225 ~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~ 275 (1040) ...+.|.||+.|-+++.+...+..+++. +-.+++.++|.++....|.... T Consensus 80 ~~~dvI~IDE~QFf~~~~v~~~~~l~~~-g~~Vi~aGLd~df~~~~F~~~~ 129 (147) T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAES-GRRVICAGLDXDFRGKPFGPIP 129 (147) T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHH T ss_pred CCCCEEEEECHHHCCCCHHHHHHHEECC-CCEEEEEEEECHHHHCCHHHHH T ss_conf 5588999812432365178885511014-6268999753221326077799 Done!