Probab=98.47 E-value=3.6e-05 Score=47.35 Aligned_cols=233 Identities=13% Similarity=0.083 Sum_probs=122.7
Q ss_pred CCCEEEECCCCCHHHHHHHH-HHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHH
Q ss_conf 88489838988937999999-97112101123678981332220676279689999999998511888651403312577
Q gi|254780823|r 5 KPNVFTIAPSSPFFREMIPA-LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 (1040)
Q Consensus 5 ~~~v~~~~~~~~fl~~~a~~-l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~ 83 (1040)
.|-+..-+||.+ ++.+-. .+...+. -...+|. +++++++|+.++..+++.+...... ..-.+.|.|+++
T Consensus 25 g~~lV~g~aGSG--KTt~l~~ri~~ll~----~~~~~p~---~il~lt~t~~aa~~~~~~~~~~~~~-~~~~~~i~T~hs 94 (318)
T d1pjra1 25 GPLLIMAGAGSG--KTRVLTHRIAYLMA----EKHVAPW---NILAITFTNKAAREMRERVQSLLGG-AAEDVWISTFHS 94 (318)
T ss_dssp SCEEEEECTTSC--HHHHHHHHHHHHHH----TTCCCGG---GEEEEESSHHHHHHHHHHHHHHHGG-GGTTSEEEEHHH
T ss_pred CCEEEEECCCCC--HHHHHHHHHHHHHH----CCCCCHH---HEEEEECCHHHHHHHHHHHHHHCCC-CCCCCEEECHHH
T ss_conf 998999529866--89999999999998----0899878---9375766498999899999862134-333340540999
Q ss_pred HHHHHHHCCCCCCC-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65655404543346-77888-88189999999999999863100000012232111356978899989999999999997
Q gi|254780823|r 84 VVEEKFTADLLLSY-NLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 (1040)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~-~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~ 161 (1040)
|++..+........ ..... +...+... ............... .... .....+.....
T Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~-------~~~~~i~~~~~ 153 (318)
T d1pjra1 95 MCVRILRRDIDRIGINRNFSILDPTDQLS---VMKTILKEKNIDPKK-----------FEPR-------TILGTISAAKN 153 (318)
T ss_dssp HHHHHHHHHGGGGTCCTTCEECCHHHHHH---HHHHHHHTTSCTTTT-----------CCHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCEECCHHHHHH---HHHHHHHHHCCCCCC-----------CCHH-------HHHHHHHHHHH
T ss_conf 99999998899818998985367788888---888778872678211-----------6768-------89999877776
Q ss_pred CCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-----HHHHHCCCCCEEEEEECC
Q ss_conf 599978987400220207999999999999999999753248889899999999874-----434422768809998345
Q gi|254780823|r 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGST 236 (1040)
Q Consensus 162 ~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~-----~~~~~~~~~~~i~v~g~~ 236 (1040)
............ ....+.. +..+++.|...+...+..|............ ........+.+|+||++|
T Consensus 154 ~~~~~~~~~~~~---~~~~~~~----~~~~~~~y~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDE~Q 226 (318)
T d1pjra1 154 ELLPPEQFAKRA---STYYEKV----VSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQ 226 (318)
T ss_dssp TTCCHHHHTTC------CHHHH----HHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGG
T ss_pred HCCCHHHHHHHH---CCHHHHH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 326789998740---0279999----999999999999982787746789999988502799999875203111038777
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 66167999999986148968998248632107888643342
Q gi|254780823|r 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 (1040)
Q Consensus 237 ~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 277 (1040)
|+++.+..++..+...... ++..+|+.+..+.|+++...
T Consensus 227 D~s~~q~~~~~~l~~~~~~--~~~~gD~~Q~I~~f~ga~~~ 265 (318)
T d1pjra1 227 DTNRAQYTLVKKLAERFQN--ICAVGDADQSIYRWRGADIQ 265 (318)
T ss_dssp GCCHHHHHHHHHHHTTTCC--EEEEECGGGCCCGGGTCCTH
T ss_pred HHHHHHHHHHHHHHHHHCC--EEEECCCCCCCCCCCCCCHH
T ss_conf 7789999999999876156--35631565310146667859
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]