HHSEARCH alignment of GI: 254780823 and SCOP domain: d1w36b1

Alignment
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.15  E-value=8.5e-09  Score=71.11  Aligned_cols=97  Identities=9%  Similarity=-0.081  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-------HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             9999999999999975324888989999999987443-------442276880999834566167999999986148968
Q gi|254780823|r  184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA  256 (1040)
Q Consensus       184 ~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~-------~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~  256 (1040)
                      ...++..+++.|...+...|..|+......+......       ..-..++++|+||+|||+++.|.++++.|.+.....
T Consensus       328 ~~~~~~~~~~~y~~~k~~~~~lDf~Dl~~~~~~~l~~~~~~~~~~~l~~~~~~ilVDEfQDts~~Q~~ll~~L~~~~~~~  407 (485)
T d1w36b1         328 ITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPET  407 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTTHHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             99999999999999999818865288999988765303289999997234786871120127999999999998079998


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             998248632107888643342012
Q gi|254780823|r  257 IVLPGLDCHIPTAIWNTITEKSTN  280 (1040)
Q Consensus       257 ~~~~~~d~~~~~~~~~~~~~~~~~  280 (1040)
                      .++..+|+.|++|.|+|++.....
T Consensus       408 ~l~~VGD~kQSIY~FRgad~~~f~  431 (485)
T d1w36b1         408 ALLLIGDPKQAIYAFRGADIFTYM  431 (485)
T ss_dssp             EEEEEECGGGCCCGGGTCCHHHHH
T ss_pred             EEEEEECCCCHHCCCCCCCHHHHH
T ss_conf             699984671001456688979999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]