HHSEARCH alignment of GI: 254780823 and SCOP domain: d1w36b3

Alignment
>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.28  E-value=1.7e-12  Score=95.32  Aligned_cols=151  Identities=17%  Similarity=0.162  Sum_probs=86.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH------CCCC
Q ss_conf             9889989999999999861258983478999999999996532798669999999999999999999973------2468
Q gi|254780823|r  804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK------IQSS  877 (1040)
Q Consensus       804 ~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~  877 (1040)
                      ..+..||++|.+||.+--.  ....   .+.+.+.+    .........    ...+...+..++.....      ....
T Consensus        49 ~Ga~~Gt~lH~vlE~ldf~--~~~~---~~~i~~~l----~~~~~~~~~----~~~~~~~i~~~l~~pl~~~~~~L~~l~  115 (276)
T d1w36b3          49 RGASPGTFLHSLFEDLDFT--QPVD---PNWVREKL----ELGGFESQW----EPVLTEWITAVLQAPLNETGVSLSQLS  115 (276)
T ss_dssp             CSHHHHHHHHHHTTSCCSS--SCCC---HHHHHHHH----HHTTCCGGG----HHHHHHHHHHHHSSCSSSSSCCGGGCC
T ss_pred             CCCCCHHHHHHHHHCCCCC--CCCC---HHHHHHHH----HHCCCCCCC----HHHHHHHHHHHHHCCCCCCCHHHHHCC
T ss_conf             8885332699999617878--9899---99999999----973675101----899999999998472778755366453


Q ss_pred             CEEEEEEEEEEEEECCC----------------------------CEEEEEEEEEEEECCCCCEEEEECCCCCCCCH---
Q ss_conf             85999996568897882----------------------------37999999788887998589997268534688---
Q gi|254780823|r  878 IEKIFVNIPAKMAIESI----------------------------GIHLTGFADRIDLLKSGFVDITDYKTGDNPKK---  926 (1040)
Q Consensus       878 ~~~~~~E~~~~~~i~~~----------------------------~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~---  926 (1040)
                      ......|.+|.+.+...                            ...|+|.||-|.+. +|+++||||||....+.   
T Consensus       116 ~~~~~~E~~F~lpl~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~g~l~G~IDlvf~~-~g~~~llDYKTn~Lg~~~~~  194 (276)
T d1w36b3         116 ARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSA  194 (276)
T ss_dssp             GGGEEEEEEEEEEECSCCCHHHHHHHHHHHCSSTTSCCCCCSCCCEEEEEEEEEEEEBS-SSCBCCEEEECCCCCSSGGG
T ss_pred             HHHHEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE-CCEEEEEEEECCCCCCCCCC
T ss_conf             23314321024116741017789999752363001365333210066377788999999-99999998005656887343


Q ss_pred             ---H----H-HHCCCCCCHHHHHHHHHHCC---CCCC-CCCCCCCEEEEEECCC
Q ss_conf             ---7----9-84230121699999998288---6777-8557421388860686
Q gi|254780823|r  927 ---E----T-AQKLIDPQLSLEAAALKAGS---FSQI-DCRKVANLFYIRLKQK  968 (1040)
Q Consensus       927 ---~----~-~~~~~~~QL~lY~~~~~~~~---~~~~-~~~~~~~~~y~~l~~~  968 (1040)
                         .    . ...+|.+|+.+|++|+.+=-   ..+. .....++..|+.+++=
T Consensus       195 Y~~~~l~~~m~~~~Y~lQ~~lY~~AL~R~L~~r~~~y~~~~~~GGv~YlFlRG~  248 (276)
T d1w36b3         195 YTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV  248 (276)
T ss_dssp             SBHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHSSSCCHHHHCCCCEEEESSSC
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCC
T ss_conf             589999999998768899999999999999976689877660575899996788


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
domain: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
species: Escherichia coli [TaxId: 562]