HHSEARCH alignment of GI: 254780823 and SCOP domain: d1w36c1

Alignment
>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.42  E-value=5.8e-12  Score=91.88  Aligned_cols=240  Identities=12%  Similarity=0.039  Sum_probs=141.6

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHH
Q ss_conf             98389889379999999711210112367898133222067627968999999999851188865140331257765655
Q gi|254780823|r    9 FTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK   88 (1040)
Q Consensus         9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~   88 (1040)
                      |+|..+.- ++.+++.+..-.- . .  ...+|  |...+|||||+.+++||+..|+++.|..+.+  ++.+.+.|....
T Consensus         2 l~ly~SNr-le~L~~~l~~~l~-~-~--p~~~P--f~~e~IvV~s~gm~~WL~~~LA~~~GI~Ani--~f~~p~~~i~~l   72 (347)
T d1w36c1           2 LRVYHSNR-LDVLEALMEFIVE-R-E--RLDDP--FEPEMILVQSTGMAQWLQMTLSQKFGIAANI--DFPLPASFIWDM   72 (347)
T ss_dssp             EEEEEESC-HHHHHHHHHHHHH-S-S--CCCCS--SCCCBEECSSHHHHHHHHHHHHHTTSCBCCC--BCCCHHHHHHHH
T ss_pred             CEEECCCC-HHHHHHHHHHHHH-H-C--CCCCC--CCCCEEEECCHHHHHHHHHHHHHHHCCEEEE--CCCCHHHHHHHH
T ss_conf             86660379-9999999999998-4-8--88999--8888788797689999999999982927862--579989999999


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             40454334677888881899999999999998631-00000012232111356978899989999999999997599978
Q gi|254780823|r   89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE  167 (1040)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~  167 (1040)
                      ...-... .....+.++..-.+.+++++..+.... ....     ...+....+..+.+.+|..|+++||+|..++.  +
T Consensus        73 ~~~~l~~-~~~~~~~~~~~L~Wrl~~lL~~~~~~~~~~~l-----~~yL~~~~~~~r~~qLA~~iAdlFdqY~~yRP--d  144 (347)
T d1w36c1          73 FVRVLPE-IPKESAFNKQSMSWKLMTLLPQLLEREDFTLL-----RHYLTDDSDKRKLFQLSSKAADLFDQYLVYRP--D  144 (347)
T ss_dssp             HHHHSSS-CCSSCTTCHHHHHHHHHHHHHHHCSSSTTHHH-----HHHTTSSCSSHHHHHHHHHHHHHHHHHTTSSH--H
T ss_pred             HHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCH--H
T ss_conf             9985588-73337786676899999985864038442899-----99980475177899999999999999983698--9


Q ss_pred             HHHHCCHH------CCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHH--CCCCCEEEEEECCC
Q ss_conf             98740022------0207999999999999999999753248--88989999999987443442--27688099983456
Q gi|254780823|r  168 DLHALKNE------KYGMWWLLAADFLKIASKYWTERLVELN--ASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTG  237 (1040)
Q Consensus       168 ~L~~l~~~------~~~~~w~~~~~fL~~~~~~~~~~l~~~g--~~d~~~~~~~~~~~~~~~~~--~~~~~~i~v~g~~~  237 (1040)
                      -|..-...      .....||..+-  ..+.+.    ....+  ...+........+.......  ..-+.+|+|+|.+.
T Consensus       145 wl~~We~g~~~~~~~~~~~WQ~~LW--r~L~~~----~~~~~~~~~h~a~l~~~~~~~l~~~~~~~~~lP~Ri~vFGis~  218 (347)
T d1w36c1         145 WLAQWETGHLVEGLGEAQAWQAPLW--KALVEY----THQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA  218 (347)
T ss_dssp             HHHHHHTTCCCTTCCTTHHHHHHHH--HHHHHH----HHHTTCCCCCSTTTHHHHHHHHHSCTTCCCSCCSEEEEESCCC
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHH--HHHHHH----HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf             9998863898766643454799999--999986----3435776567479999999987416546455886289984797


Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf             6167999999986148968998248632107888
Q gi|254780823|r  238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW  271 (1040)
Q Consensus       238 ~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~  271 (1040)
                      +++.+..+++++++..+.+.++.++|..++.+..
T Consensus       219 Lpp~~l~~L~aLS~~~dV~l~~lnPc~~yW~di~  252 (347)
T d1w36c1         219 LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIK  252 (347)
T ss_dssp             CCHHHHHHHHHHTTTSEEEEEEECSCSSCCSCCC
T ss_pred             CCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHC
T ss_conf             9999999999986678269984078878886530


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain
species: Escherichia coli [TaxId: 562]