HHSEARCH alignment of GI: 254780823 and SCOP domain: g1qhh.1

Alignment
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=99.95  E-value=8.1e-22  Score=156.52  Aligned_cols=573  Identities=14%  Similarity=0.111  Sum_probs=288.2

Q ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHH
Q ss_conf             88884898389889379999999711210112367898133222067627968999999999851188865140331257
Q gi|254780823|r    3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG   82 (1040)
Q Consensus         3 ~~~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~   82 (1040)
                      .+.|-.-.-.||.+  ++..---....+...   .+.+|.   +++||++||.|+..+++++.+.++.. .--+.|.|++
T Consensus        23 ~~~~~lV~A~AGSG--KT~~lv~ri~~ll~~---~~~~p~---~Il~ltft~~Aa~ei~~Ri~~~l~~~-~~~~~v~TfH   93 (623)
T g1qhh.1          23 TEGPLLIMAGAGSG--KTRVLTHRIAYLMAE---KHVAPW---NILAITFTNKAAREMRERVQSLLGGA-AEDVWISTFH   93 (623)
T ss_dssp             CSSCEEEEECTTSC--HHHHHHHHHHHHHHT---TCCCGG---GEEEEESSHHHHHHHHHHHHHHHGGG-GTTSEEEEHH
T ss_pred             CCCCEEEEEECCHH--HHHHHHHHHHHHHHC---CCCCCC---CEEEEECCHHHHHHHHHHHHHHCCCC-CCCCEEECHH
T ss_conf             99998999818658--999999999999980---998933---09999441999999999999861543-5787898299


Q ss_pred             HHHHHHHHCCCCCCC-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             765655404543346-77888-8818999999999999986310000001223211135697889998999999999999
Q gi|254780823|r   83 DVVEEKFTADLLLSY-NLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE  160 (1040)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~  160 (1040)
                      +|+...+........ ...+. +++.++...+......    ..   .+.       ......       ..........
T Consensus        94 s~~~~il~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~----~~---~~~-------~~~~~~-------~~~~~~~~~~  152 (623)
T g1qhh.1          94 SMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKE----KN---IDP-------KKFEPR-------TILGTISAAK  152 (623)
T ss_dssp             HHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHT----TS---CTT-------TTCCHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHH----HC---CCC-------CCCCHH-------HHHHHHHHHH
T ss_conf             99999999979983899998537889999999999986----33---362-------225689-------9999877777


Q ss_pred             HCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH---H--HHHHCCCCCEEEEEEC
Q ss_conf             7599978987400220207999999999999999999753248889899999999874---4--3442276880999834
Q gi|254780823|r  161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE---A--EHLMKGTKGPIIIAGS  235 (1040)
Q Consensus       161 ~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~---~--~~~~~~~~~~i~v~g~  235 (1040)
                      ...+.+.....      ...+    ..+..+++.|...+...+..+............   .  .......+..|+||++
T Consensus       153 ~~~~~~~~~~~------~~~~----~~~~~~~~~y~~~~~~~~~i~~~d~~~~~~~~~~~~~~i~~~~~~~~~~i~vDE~  222 (623)
T g1qhh.1         153 NELLPPEQFAK------RYYE----KVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEY  222 (623)
T ss_dssp             HTTCCHHHHTT------CCTH----HHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHSHHHHHHHHHHCCEEEESCG
T ss_pred             HHCCCHHHHHH------HHHH----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCEEEEECCCC
T ss_conf             62388776665------4699----9999999999999997699883678999999874099999863124247640234


Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf             56616799999998614896899824863210788864334201233333444676368999999762999666025776
Q gi|254780823|r  236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN  315 (1040)
Q Consensus       236 ~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  315 (1040)
                      |++++.+..++..+......  ++..+|+++..+.|+++..........                 .....  ....+..
T Consensus       223 QD~~~~q~~~~~~l~~~~~~--l~~~gd~~q~iy~f~ga~~~~~~~~~~-----------------~~~~~--~~~~L~~  281 (623)
T g1qhh.1         223 QDTNRAQYTLVKKLAERFQN--ICAVGDADQSIYRWRGADIQNILSFER-----------------DYPNA--KVILLEQ  281 (623)
T ss_dssp             GGCCHHHHHHHHHHHTTTCC--EEEEECGGGCCCGGGTCCTHHHHHHHH-----------------HSTTC--EEEEECB
T ss_pred             CCCHHHHHHHHHHHHCCCCC--EEEEECCCCCCCCCCCCCHHHHHHHHH-----------------HCCCC--EEEEECC
T ss_conf             54157899999997345574--798504654324667888899999987-----------------55676--6999013


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC---CCEEEEE
Q ss_conf             6645367777544420111221000000123567653213378159955998999999999999986422---9849998
Q gi|254780823|r  316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALI  392 (1040)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~---~~~~avv  392 (1040)
                      ......................       ..............+.++...+..++...+.....+.....   ..+++|+
T Consensus       282 ~~R~~~~i~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~aiL  354 (623)
T g1qhh.1         282 NYRSTKRILQAANEVIEHNVNR-------KPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVL  354 (623)
T ss_dssp             CSSSCHHHHHHHHHHHTTCSSC-------CCCCCBCSSCCCCCEEEEEEEEHHHHHHHHHHHHHHHHTTTSCCGGGEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             3254431656788776430245-------643004013689854898416577777765445789997389885564899


Q ss_pred             ECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             02641135788843551377766569003528898999999999837999789999862965456679389999999732
Q gi|254780823|r  393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE  472 (1040)
Q Consensus       393 ~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~  472 (1040)
                      ++.......+...|...+||+.+.++..+.+++.++.++++++++.++.+..++.+++.+|...................
T Consensus       355 ~r~~~~~~~l~~~L~~~~ip~~~~~~~~~~~~~ei~~i~~~l~~~~~~~d~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  434 (623)
T g1qhh.1         355 YRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDLFEALGELE  434 (623)
T ss_dssp             ESSGGGHHHHHHHHHHTTCCEEESSSCCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCTTTSCCC-CHHHHHTHH
T ss_pred             EECHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             82528799999999977999999689760245999999999999809886699999984630123301111366666542


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             23210455777811178887522011444434552010155343257999999989999998750110022102378899
Q gi|254780823|r  473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD  552 (1040)
Q Consensus       473 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~  552 (1040)
                      ...                                    ................   ...        ...........
T Consensus       435 ~~~------------------------------------~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~  467 (623)
T g1qhh.1         435 MIG------------------------------------LGAKAAGALAAFRSQL---EQW--------TQLQEYVSVTE  467 (623)
T ss_dssp             HHC------------------------------------CTTHHHHHHHHHHHHH---HHH--------HHHTTTSCHHH
T ss_pred             CCH------------------------------------HHHHHHHHHHHHHHHH---HHH--------HHHHHCCCHHH
T ss_conf             000------------------------------------4566655667889888---888--------88863134689


Q ss_pred             HHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCE
Q ss_conf             9999999997236763----211145665777999999998664213766447788999999862244335667787737
Q gi|254780823|r  553 WTKLTVTCLQNVCLDE----HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL  628 (1040)
Q Consensus       553 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v  628 (1040)
                      .....   ........    ...............+......+......  ..   +..++...        .....+.|
T Consensus       468 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---l~~~l~~~--------~~~~~~~V  531 (623)
T g1qhh.1         468 LVEEV---LDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDD--KS---LIAFLTDL--------ALISGDAV  531 (623)
T ss_dssp             HHHHH---HHHTSHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHCSC--CC---HHHHHHHT--------TTCCCCCE
T ss_pred             HHHHH---HHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--HH---HHHHHHHH--------HHCCCCCE
T ss_conf             99999---98527098986303556888899999999999998743871--15---99999987--------50679956


Q ss_pred             EECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEECCC--
Q ss_conf             98034333566586378528631134566666764896788564899966788899999999855985-999920467--
Q gi|254780823|r  629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--  705 (1040)
Q Consensus       629 ~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~--  705 (1040)
                      .|||+|.++|++||+|||+|++++.||.....+.              .+......+.+|+.+++|++ ++++++...  
T Consensus       532 ~l~TiH~aKGlE~D~Vii~~~~~~~~P~~~~~~~--------------~~~~~EErRLlYVA~TRA~~~L~i~~~~~~~~  597 (623)
T g1qhh.1         532 MLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLED--------------DDEMEEERRLAYVGITRAEEELVLTSAQMRTL  597 (623)
T ss_dssp             EEEEGGGGTTCCEEEEEECCCBTBTTTBTTTTTC--------------HHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEE
T ss_pred             EEEEHHHHHCCCCCEEEEECCCCCCCCCCCCCCC--------------CHHHHHHHHHHHHHHHHHHHEEEEEEECCCCC
T ss_conf             9977763202568889996561698876345798--------------35489999999978967845659987370345


Q ss_pred             --CCCCCCCCHHHHHHH
Q ss_conf             --776656653788877
Q gi|254780823|r  706 --NNIPTIASRWLQRLL  720 (1040)
Q Consensus       706 --~~~~~~ps~~l~~l~  720 (1040)
                        ......||+|+.+|.
T Consensus       598 ~~~~~~~~pS~F~~el~  614 (623)
T g1qhh.1         598 FGNIQMDPPSRFLNEIP  614 (623)
T ss_dssp             TTEEECCCBCGGGGGSC
T ss_pred             CCCCCCCCCCCCHHHCC
T ss_conf             78876698885487628


SCOP domain information

class:
fold:
superfamily:
family:
domain:
species: