PSIBLAST alignment of GI: 254780823 and protein with PDB id: 1w36
gi|56966627|pdb|1W36|C Chain C, Recbcd:dna Complex Length = 1122
>gi|56966630|pdb|1W36|F Chain F, Recbcd:dna Complex Length = 1122
>gi|266618791|pdb|3K70|C Chain C, Crystal Structure Of The Complete Initiation Complex Of Recbcd Length = 1122
Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats.
Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)
Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
+++ AL+ + DP P I V + Q L+ + G + I
Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62
Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
L +L + +L L+ + + L+
Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118
Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
L+ AD+ D W L + L A +T
Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176
Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
+L + + + I G + P + + + H
Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235
Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
++ + I + ++
Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295
Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
LL D L + + +
Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355
Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
+ + S + + + E + L L+E+ + ++ AD
Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415
Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
+ + + IS + SLL+ + L+
Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475
Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
P+ F E+ L + + +R + ++ +L+ +
Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535
Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
S + + L + + + L+ + + +W + L
Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595
Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
L + + ++ ++ + D + + +D E + +
Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653
Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
+ I + R + F + L G+N+GV+P+ A F +M +
Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710
Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
E + L + R +N S +Q L+ G
Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770
Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
+ G+ L ++ P P
Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830
Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
T +++ P + + L+++F + PD G + I +L+ +
Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890
Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
++ E + D +++ + Q
Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938
Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
++ + G+ +TG G P + + QL L
Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982
Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
E A + D + +E++L L +++
Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025
Query: 1000 LLQNGE 1005
+ G
Sbjct: 1026 GYREGM 1031