RPSBLAST alignment for GI: 254780823 and conserved domain: TIGR02786
>gnl|CDD|163020 TIGR02786, addB_alphas, double-strand break repair protein AddB, alphaproteobacterial type. AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage. More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of the alphaproteobacteial type. Length = 1021
Score = 870 bits (2250), Expect = 0.0
Identities = 383/1038 (36%), Positives = 568/1038 (54%), Gaps = 29/1038 (2%)
Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
VF+I P PF + LL G LV F D +PL LA TIYVPT+RA + LR F+++
Sbjct: 2 VFSIPPGRPFLDALAEGLLKGRLVAGFEADGDDPLALADATIYVPTRRAARALREAFVDV 61
Query: 68 TGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125
++ +LP I+ LGDV E++ F A+ +L P +S ++RLLELARLI WR+KL +
Sbjct: 62 LDGRAALLPRIRPLGDVDEDEALFAAEGPAILDLPPAISPLERLLELARLIRAWRDKLVE 121
Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
+ P PA+AIWLA++LAD++D +ETE W L L W +
Sbjct: 122 ---------DVLAPAGPADAIWLARDLADLMDEMETEGVDWSKLDDLAEGDLARHWQVTL 172
Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATAR 244
FL+I ++ W +RL EL S+P + L+RA A +GP+I AGSTGSIPATA
Sbjct: 173 KFLEIVTRAWPKRLAELGRSNPAARRNRLLRALAARWATNPPEGPVIAAGSTGSIPATAD 232
Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
L++ VA P GA+VLPGLD + W + T+ S HPQY L +LLD L
Sbjct: 233 LLAVVARLPQGAVVLPGLDLDMDEEAWQALGPAGTDPPSV----FGHPQYGLKRLLDRLG 288
Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
+ R++V+ G + R ++S++ P +T+D + + I + F++++LIEA
Sbjct: 289 VSRKEVREWGPADRGLRKRERLVSEALRPAETTDRWGSQREQPAEAGIAEAFANLSLIEA 348
Query: 365 DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
NEREEA++IA+ALR ++++ K +AL+T DR LARRV EL RFGI+ D SAG PLS T
Sbjct: 349 ANEREEALAIALALREAVEDPGKTAALVTPDRALARRVAAELKRFGIDADDSAGRPLSLT 408
Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
+ +L L A+F D +A+ +L+KHPL + G A LELVALRG
Sbjct: 409 PPAVLLRLLAEAVFAPLDPVALLSLLKHPLVRLGEERDDWRAAAELLELVALRGGTPRAG 468
Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
I+ L + R+ ++ VP W S L E+ E A L + + I PL + +
Sbjct: 469 ILALPAFFERRLLALGDDPEVPAWHSALPEQSIEAARPLCELLEIAIEPLESLAGRREEL 528
Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
++ + TV ++ + DE L L+ E G L+SLF++++ + + +A +
Sbjct: 529 -----DAELAEATVELMEALSRDEEGWLAALYEGEAGHKLASLFAELLSSAHGLDFDARD 583
Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
W D++ L+ E V+P+ +FI G LE+RL D +++GGLNEGVWP +PFL
Sbjct: 584 WPDVLQALMATEAVRPRDGGHPRIFIWGALEARLQTADLVVIGGLNEGVWPPAPRNDPFL 643
Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
SR M+ +L L E+ IG +AHDF+ A G + ++ TR+ R P + SRWLQRL L G
Sbjct: 644 SRPMRHELGLPPPERRIGLSAHDFQQALGAKEVVLTRAARSGGAPAVPSRWLQRLEALAG 703
Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
D + +++RG+ YL W R LD RP P PP+ +PR +S +EI+ L DPYA
Sbjct: 704 ADVLEEMRRRGERYLHWARALDEPQDVAPATRPAPRPPVADRPRHFSVTEIETLRRDPYA 763
Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
+YAR ILKL + +DP+ DRGTL H+I+ +++ + + +++I + F
Sbjct: 764 IYARHILKLRPLDPLDRDPEAADRGTLIHDILERFVREYPDPLPADAADALRKIGRAEFA 823
Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIHLTGFAD 903
NLPP + +W F + + F + E + + +IF K + G L+G AD
Sbjct: 824 SLNLPPTAEALWWPRFARAADWFADWERARRLDVRRIFAEARGRKELVGERGFTLSGRAD 883
Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
RID G I DYKTG P + + + PQL+LEAA L G+F I ANL+Y+
Sbjct: 884 RIDRTPDGSAAILDYKTGAPPSGKQVRAGLSPQLALEAALLMRGAFKDIGAPTPANLYYV 943
Query: 964 RLK--QKFKIDCITNDKKKY-----SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
RL + I ++K K A +L+E++ + LI+++ + +Q + S
Sbjct: 944 RLGGNGPVGEESILSEKGKGGKEPQDAPDLAEEAWERLIQLIRAYDDPDQGYTSRALPFG 1003
Query: 1017 KSNIQSEYDHLARVAEWR 1034
K +YDHLARV EW
Sbjct: 1004 KKEYYGDYDHLARVDEWS 1021