HHsearch alignment for GI: 254780824 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=93.80 E-value=0.22 Score=29.01 Aligned_cols=87 Identities=22% Similarity=0.254 Sum_probs=47.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHCCCCCCEEEEEEECCCCHHHHHC-CCHH------
Q ss_conf 89969999878786889999999976078885302452020-110037886089998651789777530-5836------
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT-LVQLYDASIPVAHFDFYRLSSHQEVVE-LGFD------ 102 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~-l~~~Y~~~~~i~H~DlYRL~~~~E~~~-lg~~------ 102 (162)
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~d~lel~~s~~~~~~i~~~~vr~~~ 98 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP---AGNHPDFLELNPSDLRKIDIIVEQVRELA 98 (325)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC---CCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 887610037999997899999999996586643345520022444320---25688659977321333300699999999
Q ss_pred HHC------C-CCEEEEECHHHHHC
Q ss_conf 750------8-97899998556320
Q gi|254780824|r 103 EIL------N-ERICIIEWPEIGRS 120 (162)
Q Consensus 103 e~~------~-~~i~lIEWpe~~~~ 120 (162)
T Consensus 99 ~~~~~~~~~~~~kviiidead~mt~ 123 (325)
T COG0470 99 EFLSESPLEGGYKVVIIDEADKLTE 123 (325)
T ss_pred HHCCCCCCCCCCEEEEEECCCCCCH
T ss_conf 8604465667726999732032698