HHsearch alignment for GI: 254780824 and conserved domain: COG0470

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=93.80  E-value=0.22  Score=29.01  Aligned_cols=87  Identities=22%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHCCCCCCEEEEEEECCCCHHHHHC-CCHH------
Q ss_conf             89969999878786889999999976078885302452020-110037886089998651789777530-5836------
Q gi|254780824|r   31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT-LVQLYDASIPVAHFDFYRLSSHQEVVE-LGFD------  102 (162)
Q Consensus        31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~-l~~~Y~~~~~i~H~DlYRL~~~~E~~~-lg~~------  102 (162)
T Consensus        22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~d~lel~~s~~~~~~i~~~~vr~~~   98 (325)
T COG0470          22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP---AGNHPDFLELNPSDLRKIDIIVEQVRELA   98 (325)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC---CCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             887610037999997899999999996586643345520022444320---25688659977321333300699999999


Q ss_pred             HHC------C-CCEEEEECHHHHHC
Q ss_conf             750------8-97899998556320
Q gi|254780824|r  103 EIL------N-ERICIIEWPEIGRS  120 (162)
Q Consensus       103 e~~------~-~~i~lIEWpe~~~~  120 (162)
T Consensus        99 ~~~~~~~~~~~~kviiidead~mt~  123 (325)
T COG0470          99 EFLSESPLEGGYKVVIIDEADKLTE  123 (325)
T ss_pred             HHCCCCCCCCCCEEEEEECCCCCCH
T ss_conf             8604465667726999732032698