HHsearch alignment for GI: 254780824 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=94.60 E-value=0.036 Score=33.82 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=54.8
Q ss_pred HHHHHHHHHCCCCCE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC--CCCE-EEEEEECCC---
Q ss_conf 999999984589969---9998787868899999999760788853024520201100378--8608-999865178---
Q gi|254780824|r 21 CLGRHLASILRLGDC---LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDA--SIPV-AHFDFYRLS--- 91 (162)
Q Consensus 21 ~la~~la~~l~~g~i---i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~--~~~i-~H~DlYRL~--- 91 (162)
T Consensus 23 ~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-----~~~~ePC~~C~~Ck~I~~g~~~DviEiDaAS 97 (515)
T COG2812 23 HVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-----GPTAEPCGKCISCKEINEGSLIDVIEIDAAS 97 (515)
T ss_pred HHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCC-----CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999999998084233365137777671049999999956889-----8777722531666865148864101136444
Q ss_pred --CHHHHHCCCHHHHC-----C-CCEEEEECHHHH
Q ss_conf --97775305836750-----8-978999985563
Q gi|254780824|r 92 --SHQEVVELGFDEIL-----N-ERICIIEWPEIG 118 (162)
Q Consensus 92 --~~~E~~~lg~~e~~-----~-~~i~lIEWpe~~ 118 (162)
T Consensus 98 n~gVddiR~i-~e~v~y~P~~~ryKVyiIDEvHML 131 (515)
T COG2812 98 NTGVDDIREI-IEKVNYAPSEGRYKVYIIDEVHML 131 (515)
T ss_pred CCCHHHHHHH-HHHHCCCCCCCCCEEEEEECHHHH
T ss_conf 5486799999-987246886666418998318764