HHsearch alignment for GI: 254780824 and conserved domain: PRK06647
>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=95.83 E-value=0.044 Score=33.29 Aligned_cols=133 Identities=21% Similarity=0.206 Sum_probs=72.5
Q ss_pred HHHHHHHHHCCCCC---EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH------HHCC-C-CCCEEEEEEEC
Q ss_conf 99999998458996---999987878688999999997607888530245202011------0037-8-86089998651
Q gi|254780824|r 21 CLGRHLASILRLGD---CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV------QLYD-A-SIPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g~---ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~------~~Y~-~-~~~i~H~DlYR 89 (162)
T Consensus 23 ~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~-----~~~~~PCg~C~sC~~i~~g~~~DviEidaas 97 (560)
T PRK06647 23 FVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVN-----GPTIMPCGECFSCKSIDNDSSLDVIEIDGAS 97 (560)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEECCCC
T ss_conf 99999999997499774366328998789999999999965999-----9998888788788887459998757643645
Q ss_pred CCCHHHHHCCCHHHH-CC-----CCEEEEECHHHHHC--------C---CCCCEEEEEEEECCC-------EEEEEEE--
Q ss_conf 789777530583675-08-----97899998556320--------4---995409999987398-------7699999--
Q gi|254780824|r 90 LSSHQEVVELGFDEI-LN-----ERICIIEWPEIGRS--------L---LPKKYIDIHLSQGKT-------GRKATIS-- 143 (162)
Q Consensus 90 L~~~~E~~~lg~~e~-~~-----~~i~lIEWpe~~~~--------~---lp~~~i~I~i~~~~~-------~R~i~i~-- 143 (162)
T Consensus 98 n~~VddIR~l-~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEPP~~~~FILaTte~~KI~~TI~SRCQ~f~Fk 176 (560)
T PRK06647 98 NTSVQDVRQI-KEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFR 176 (560)
T ss_pred CCCHHHHHHH-HHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCHHHHHHHHEEEECC
T ss_conf 4888999999-998632876687069996465655999999999986348875599997799476848999651041055
Q ss_pred --ECCHHHHHHHHHHHHH
Q ss_conf --5860899999999986
Q gi|254780824|r 144 --AERWIISHINQMNRST 159 (162)
Q Consensus 144 --~~~~~~~~l~~~~~~~ 159 (162)
T Consensus 177 ~i~~~~I~~~L~~I~~~E 194 (560)
T PRK06647 177 LLSLEKIYEMLKKVCLED 194 (560)
T ss_pred CCCHHHHHHHHHHHHHHC
T ss_conf 599999999999999867