HHsearch alignment for GI: 254780824 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=93.20 E-value=0.13 Score=30.40 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=32.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHC
Q ss_conf 969999878786889999999976078885302452020110037886089998651789777530
Q gi|254780824|r 33 GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVE 98 (162)
Q Consensus 33 g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~ 98 (162)
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~----------------KkVALITtDTYRIGAVEQLKT 290 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKK----------------KTVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCC----------------CEEEEEECCCCHHHHHHHHHH
T ss_conf 71799989999888999999999986169----------------808999806634769999999