>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.

Probab=94.80 E-value=0.029 Score=34.37 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=61.2 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCCC-CEEE Q ss_conf 969999878786889999999976078885302452020110037886089998651789777530583675089-7899 Q gi|254780824|r 33 GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNE-RICI 111 (162) Q Consensus 33 g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~-~i~l 111 (162) T Consensus 30 LDH~LL~GPPGLGKTTLA~IiA~Emg~~l--~iTsG-----------P--------~L~kPgDlaai--Lt~L~~gDVLF 86 (305) T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL--KITSG-----------P--------ALEKPGDLAAI--LTNLEEGDVLF 86 (305) T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCC--EEEEC-----------C--------CCCCHHHHHHH--HHHCCCCCEEE T ss_conf 34166317568746789999999838932--67406-----------7--------55475789999--97056896310 Q ss_pred EECHHHHH----C-CCC---CCEEEEEEEECCCEEEEEEEE Q ss_conf 99855632----0-499---540999998739876999995 Q gi|254780824|r 112 IEWPEIGR----S-LLP---KKYIDIHLSQGKTGRKATISA 144 (162) Q Consensus 112 IEWpe~~~----~-~lp---~~~i~I~i~~~~~~R~i~i~~ 144 (162) T Consensus 87 IDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldL 127 (305) T TIGR00635 87 IDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDL 127 (305) T ss_pred CCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECC T ss_conf 12565048334531053001217877871289852576068

HHsearch alignment for GI: 254780824 and conserved domain: TIGR00635