HHsearch alignment for GI: 254780824 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=93.21 E-value=0.088 Score=31.45 Aligned_cols=52 Identities=27% Similarity=0.382 Sum_probs=37.6
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 99999845899699998787868899999999760788853024520201100378860899986517
Q gi|254780824|r 23 GRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRL 90 (162)
Q Consensus 23 a~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL 90 (162)
T Consensus 346 l~gi~F~~~aGe~laIIGPSgSGKStLaR~~vG~W~~~~----------------G~VRLDGadl~qW 397 (556)
T TIGR01842 346 LRGISFAIQAGEALAIIGPSGSGKSTLARILVGIWPPAS----------------GSVRLDGADLKQW 397 (556)
T ss_pred HCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCC----------------CCEEEEHHHHHCC
T ss_conf 278621563774588874786525889878872101356----------------5336403344023