HHsearch alignment for GI: 254780824 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.28 E-value=0.045 Score=33.19 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=32.0
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999999845899699998787868899999999760788
Q gi|254780824|r 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 22 la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
T Consensus 480 vl~~vsl~i~~Ge~vaIvG~sGsGKSTL~kll~Gl~~p~ 518 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred HHCCHHHEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 213631188799789998058987889999855675899