HHsearch alignment for GI: 254780824 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.72 E-value=0.0071 Score=38.06 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHCC----------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CCCCEEE
Q ss_conf 8999999999998458----------9969999878786889999999976078885302452020110037-8860899
Q gi|254780824|r 16 EKNTICLGRHLASILR----------LGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-ASIPVAH 84 (162)
Q Consensus 16 ~~~t~~la~~la~~l~----------~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-~~~~i~H 84 (162)
T Consensus 167 ~~~~~~l~~~L~~~i~~~~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~---------------~~~~~V~lIT 231 (282)
T TIGR03499 167 ESAWRWLREALENMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE---------------HGKKKVALIT 231 (282)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH---------------CCCCCEEEEE
T ss_conf 8999999999996477788765544567279997788875788999999999997---------------3899679998
Q ss_pred EEEECCCCHHHHHCCCHHHHCCCCEEEEECHHHHHCCC
Q ss_conf 98651789777530583675089789999855632049
Q gi|254780824|r 85 FDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSLL 122 (162)
Q Consensus 85 ~DlYRL~~~~E~~~lg~~e~~~~~i~lIEWpe~~~~~l 122 (162)
T Consensus 232 ~DtyRigA~eQLk~--ya~il~vp~~vv~~~~~l~~~l 267 (282)
T TIGR03499 232 TDTYRIGAVEQLKT--YAKILGVPVKVARDPKELAKAL 267 (282)
T ss_pred ECCCCHHHHHHHHH--HHHHHCCEEEEECCHHHHHHHH
T ss_conf 07776789999999--9999597489939999999999