HHsearch alignment for GI: 254780824 and conserved domain: TIGR03499

>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.72  E-value=0.0071  Score=38.06  Aligned_cols=90  Identities=19%  Similarity=0.274  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHCC----------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CCCCEEE
Q ss_conf             8999999999998458----------9969999878786889999999976078885302452020110037-8860899
Q gi|254780824|r   16 EKNTICLGRHLASILR----------LGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-ASIPVAH   84 (162)
Q Consensus        16 ~~~t~~la~~la~~l~----------~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-~~~~i~H   84 (162)
T Consensus       167 ~~~~~~l~~~L~~~i~~~~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~---------------~~~~~V~lIT  231 (282)
T TIGR03499       167 ESAWRWLREALENMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE---------------HGKKKVALIT  231 (282)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH---------------CCCCCEEEEE
T ss_conf             8999999999996477788765544567279997788875788999999999997---------------3899679998


Q ss_pred             EEEECCCCHHHHHCCCHHHHCCCCEEEEECHHHHHCCC
Q ss_conf             98651789777530583675089789999855632049
Q gi|254780824|r   85 FDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSLL  122 (162)
Q Consensus        85 ~DlYRL~~~~E~~~lg~~e~~~~~i~lIEWpe~~~~~l  122 (162)
T Consensus       232 ~DtyRigA~eQLk~--ya~il~vp~~vv~~~~~l~~~l  267 (282)
T TIGR03499       232 TDTYRIGAVEQLKT--YAKILGVPVKVARDPKELAKAL  267 (282)
T ss_pred             ECCCCHHHHHHHHH--HHHHHCCEEEEECCHHHHHHHH
T ss_conf             07776789999999--9999597489939999999999