HHsearch alignment for GI: 254780824 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.032 Score=34.06 Aligned_cols=31 Identities=42% Similarity=0.584 Sum_probs=27.2
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
T Consensus 21 ~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~ 51 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9879979999878899989999999588479