HHsearch alignment for GI: 254780824 and conserved domain: cd00876

>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.45  E-value=0.049  Score=32.97  Aligned_cols=85  Identities=15%  Similarity=0.226  Sum_probs=48.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf             99987878688999999997607888530245202011003----788608999865178977753058367508--978
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI  109 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i  109 (162)
T Consensus         2 i~ivG~~~vGKTsli~r~~~~~f~~~----~~pTi~--~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-~~~~~~~a~~~   74 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKGTFVEE----YDPTIE--DSYRKTIVVDGETYTLDILDTAGQEEFSAM-RDLYIRQGDGF   74 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCEE--EEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHHHCCEE
T ss_conf             99999699679999999961959987----788300--489999997669999999979996235578-89997643689


Q ss_pred             EEE-------------ECHHHHHCCCCCCEE
Q ss_conf             999-------------985563204995409
Q gi|254780824|r  110 CII-------------EWPEIGRSLLPKKYI  127 (162)
Q Consensus       110 ~lI-------------EWpe~~~~~lp~~~i  127 (162)
T Consensus        75 ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~  105 (160)
T cd00876          75 ILVYSITDRESFEEIKGYREQILRVKDDEDI  105 (160)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9973289878999999999999997287886